Tc09v2_t021590.1

Overview
NameTc09v2_t021590.1
Unique NameTc09v2_t021590.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1263
Properties
Property NameValue
NoteGeneral transcription factor IIH subunit 2
Model evidenceSupporting evidence includes similarity to: 1 mRNA, 1 EST, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Productgeneral transcription factor IIH subunit 2, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590083
GenbankXM_007015387.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g021590Tc09v2_g021590Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p021590.1Tc09v2_p021590.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto466574auto466574Theobroma cacaoexon
exon-auto466575auto466575Theobroma cacaoexon
exon-auto466576auto466576Theobroma cacaoexon
exon-auto466577auto466577Theobroma cacaoexon
exon-auto466578auto466578Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto466579auto466579Theobroma cacaoCDS
CDS-auto466580auto466580Theobroma cacaoCDS
CDS-auto466581auto466581Theobroma cacaoCDS
CDS-auto466582auto466582Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t021590.1 ID=Tc09v2_t021590.1|Name=Tc09v2_t021590.1|organism=Theobroma cacao|type=mRNA|length=1263bp
ATGAATAATGGAGGGGCAAGACGGATGAATGGTGGAGGCGAAGAGGACGA
TGATGAAGATTATGTGAATGGGGACCTTGATGCGTGGGAGAGAACTTACA
CCGATGAAAGGTCGTGGGAATCTTTGCAAGAGGACGAGTCAGGCCTGCTT
CGACCAATTGACAACAAGGCCCTTTATCATTCTCAGTATCGTCGCCGGCT
TCGGTCCCTTTCTTCCACTGCCACTGCTGCTCGGATCCAAAAGGGCCTCA
TTCGATATCTCTACCTTGTTATTGATCTTTCCCGGGCAGCTTCGGAGACA
GATTTTCGACCAAGTCGTATTGTTGTTATTGCAAAACATGTTGAGGCTTT
CATTAGGGAGTTTTTTGACCAGAATCCTCTTAGTCAAGTTGGCCTTTTGA
CTATCAAAGATGGGGTTGCTCAGTGCTTAACAGATCTCGGGGGTAGTCCT
GAGTCTCATATCAAAGCTTTGATGAATAAGTTGGAATGTTCAGGTGATTC
CTCCTTACAGAATGCATTGGATCTCGTAGATGGGTATCTGAATCAAATTC
CATCATATGGTCATCGTGAAGTTCTTATATTATATTCTGCTCTCAGTACT
TGTGATCCTGGAGATATAATGGAGACCATCCAGAAATGCAAGAAATCTAA
AATAAGGTGTTCAGTTATTGGCCTTGCTGCAGAAATGTTTATATGCAAAC
ATCTCTGCCAGGAAACTGGAGGAACATACTCTGTTGCATTAGATGAGTCC
CACTTTAAAGAGCTAATATTAGAGCATGCACCCCCACCACCAGCCATAGC
AGAATTTGCAACTGCTAATTTGATCAAGATGGGATTCCCTCAAAGAGCGG
CTGAGGGTTCTATATCCATTTGTTCATGTCATAAGGAAGCTAAGGTTGGT
GCAGGGTACACTTGTCCAAGATGCAAAGCACGTGTTTGTGAGCTGCCTAC
AGAATGTTGTATCTGCGGGTTGACACTCGTGTCTTCACCCCATTTGGCTA
GATCATATCATCATCTCTTCCCTATAGCACCATTTGATGAGGTGCCTCCA
TTTAGTTTAAATGATCCAAACCACAAACTGCAAAGAAATTGTTTTGGATG
CCAACAAAGCCTCCTCAACCCAGGAAACAAACCTGGCCTTCTGGTTGTGT
GCCCCAAGTGCAAAGGGTACTTCTGCCTCGACTGTGATATTTATATTCAC
GAGAGTTTGCACAATTGCCCAGGCTGTGACAGCTTCAGGCATTCCAAGGC
AGATAAAGAATGA
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protein sequence of Tc09v2_p021590.1

>Tc09v2_p021590.1 ID=Tc09v2_p021590.1|Name=Tc09v2_p021590.1|organism=Theobroma cacao|type=polypeptide|length=421bp
MNNGGARRMNGGGEEDDDEDYVNGDLDAWERTYTDERSWESLQEDESGLL
RPIDNKALYHSQYRRRLRSLSSTATAARIQKGLIRYLYLVIDLSRAASET
DFRPSRIVVIAKHVEAFIREFFDQNPLSQVGLLTIKDGVAQCLTDLGGSP
ESHIKALMNKLECSGDSSLQNALDLVDGYLNQIPSYGHREVLILYSALST
CDPGDIMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDES
HFKELILEHAPPPPAIAEFATANLIKMGFPQRAAEGSISICSCHKEAKVG
AGYTCPRCKARVCELPTECCICGLTLVSSPHLARSYHHLFPIAPFDEVPP
FSLNDPNHKLQRNCFGCQQSLLNPGNKPGLLVVCPKCKGYFCLDCDIYIH
ESLHNCPGCDSFRHSKADKE*
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