Tc09v2_t021390.1

Overview
NameTc09v2_t021390.1
Unique NameTc09v2_t021390.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length762
Properties
Property NameValue
NoteProbable pyridoxal 5'-phosphate synthase subunit PDX2
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productprobable pyridoxal 5'-phosphate synthase subunit PDX2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590063
GenbankXM_007015355.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g021390Tc09v2_g021390Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p021390.1Tc09v2_p021390.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto466168auto466168Theobroma cacaoexon
exon-auto466169auto466169Theobroma cacaoexon
exon-auto466170auto466170Theobroma cacaoexon
exon-auto466171auto466171Theobroma cacaoexon
exon-auto466172auto466172Theobroma cacaoexon
exon-auto466173auto466173Theobroma cacaoexon
exon-auto466174auto466174Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto466175auto466175Theobroma cacaoCDS
CDS-auto466176auto466176Theobroma cacaoCDS
CDS-auto466177auto466177Theobroma cacaoCDS
CDS-auto466178auto466178Theobroma cacaoCDS
CDS-auto466179auto466179Theobroma cacaoCDS
CDS-auto466180auto466180Theobroma cacaoCDS
CDS-auto466181auto466181Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t021390.1 ID=Tc09v2_t021390.1|Name=Tc09v2_t021390.1|organism=Theobroma cacao|type=mRNA|length=762bp
ATGGCCGTCGTCGGAGTGTTGGCTTTACAGGGATCCTTCAACGAACACAT
AGCAGCGCTTAAGAGGCTGGGAGTGAAAGGAGTGGAGGTAAGGAAGCCAG
AGCAGCTTCAGACTATCAGCTCTCTTATCATTCCTGGTGGAGAGAGCACC
ACCATGGCTAAGCTTGCTGAGTTTCACAATCTTTTTCCAGCTCTGCGTGA
GTTTGTTCAAATGGGGAAGCCAGTTTGGGGGACTTGTGCGGGTCTTATAT
TTTTGGCAAACAAAGCTGTTGGACAGAAAGAAGGAGGACAGGAATTAGTT
GGGGGCCTGGATTGCACTGTCCATAGAAATTACTTTGGCAGTCAGATCCA
AAGCTTCGAGGCAGAGCTTTTAGTACCAGAACTTGCATCCAGAGAAGGTG
GCCCTGAGACATTTCCTGGTGTTTTCATACGTGCTCCTGCAGTTCTCGAA
GTGGGGCCAGAAGTTGAAGTGCTGGCTGATTATCCTATTCCATCTAATAA
AGTGCTATACTCTAGTTCTGCTGTTGAAATCCAAGAGGAGAATGCTGTGC
CTGAAAAGAAAGTGATAGTTGCCATAAGGCAAGGAAACTTGCTAGGGACT
GCTTTCCACCCTGAGTTGACTGCAGACACTAGATGGCATAGTTACTTTCT
AAAGATGGCTCATGGATATGGAGAGGGGACCTCAAATACCACTGTTGCAG
TCAGCGGAGTGGATCTAAGTTCTGACAAACAAACAAGATATGATCTTCCT
ATATTTCGATAA
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protein sequence of Tc09v2_p021390.1

>Tc09v2_p021390.1 ID=Tc09v2_p021390.1|Name=Tc09v2_p021390.1|organism=Theobroma cacao|type=polypeptide|length=254bp
MAVVGVLALQGSFNEHIAALKRLGVKGVEVRKPEQLQTISSLIIPGGEST
TMAKLAEFHNLFPALREFVQMGKPVWGTCAGLIFLANKAVGQKEGGQELV
GGLDCTVHRNYFGSQIQSFEAELLVPELASREGGPETFPGVFIRAPAVLE
VGPEVEVLADYPIPSNKVLYSSSAVEIQEENAVPEKKVIVAIRQGNLLGT
AFHPELTADTRWHSYFLKMAHGYGEGTSNTTVAVSGVDLSSDKQTRYDLP
IFR*
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