Tc09v2_t020850.2

Overview
NameTc09v2_t020850.2
Unique NameTc09v2_t020850.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1146
Properties
Property NameValue
Note4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic (Fragment)
Model evidenceSupporting evidence includes similarity to: 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Product4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590007
GenbankXM_018128508.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g020850Tc09v2_g020850Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p020850.2Tc09v2_p020850.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto464980auto464980Theobroma cacaoexon
exon-auto464981auto464981Theobroma cacaoexon
exon-auto464982auto464982Theobroma cacaoexon
exon-auto464983auto464983Theobroma cacaoexon
exon-auto464984auto464984Theobroma cacaoexon
exon-auto464985auto464985Theobroma cacaoexon
exon-auto464986auto464986Theobroma cacaoexon
exon-auto464987auto464987Theobroma cacaoexon
exon-auto464988auto464988Theobroma cacaoexon
exon-auto464989auto464989Theobroma cacaoexon
exon-auto464990auto464990Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto464991auto464991Theobroma cacaoCDS
CDS-auto464992auto464992Theobroma cacaoCDS
CDS-auto464993auto464993Theobroma cacaoCDS
CDS-auto464994auto464994Theobroma cacaoCDS
CDS-auto464995auto464995Theobroma cacaoCDS
CDS-auto464996auto464996Theobroma cacaoCDS
CDS-auto464997auto464997Theobroma cacaoCDS
CDS-auto464998auto464998Theobroma cacaoCDS
CDS-auto464999auto464999Theobroma cacaoCDS
CDS-auto465000auto465000Theobroma cacaoCDS
CDS-auto465001auto465001Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t020850.2 ID=Tc09v2_t020850.2|Name=Tc09v2_t020850.2|organism=Theobroma cacao|type=mRNA|length=1146bp
ATGGCTTCCTCTCATTTGCTCTGTGACCATAGTCTCTTCTTCCCTCCTTC
CTCCAAAAACAGTCACCTGTCAATTACTCCCCAAACAAAACTTCAATTTC
GAAGAACGCCATTTCCCAAAGCATCCAAGAAACAGCTAGAGATTGTATAT
GACCCTGATGAGAGGCTAAACAAGTTAGCAGATGAGGTGGACAAGCAAGC
TTCTTTTTCAAGACTTACATTGTTCTCACCTTGTAAGATTAATGTTTTCT
TGAGAATAACCAACAAAAGGGAAGATGGGTATCATGATTTAGCATCTCTC
TTTCATACAGTTAGTCTGGGGGATATAATTAAATTCTCTTTGTCACCATC
CAAAACTAAGGATCGTTTGTCAAGCAATGTCTCTGGTGTCCCCCTTGATG
ATAGAAATTTGATTATTAAAGCCCTTAACCTCTACAGGAAAAAAACTGGC
AGTAACAACTTCTTTTGGGTTCATCTTGATAAAAAGGTGCCTACTGGAGC
AGGGCTTGGTGGTGGAAGCAGCAATGCAGCAACTGCACTTTGGGCAGCTA
ATCAGTTCAATGGTTGTATTGCAACTGAGAAGGAGCTTCAGGAATGGTCA
AGTGAGATCGGTTCGGATATCCCATTCTTTTTCTCACATGGAGCAGCATA
TTGTACCGGTCGAGGTGAGGTTGTTCAAGATATATTCCCACCTCTTCCTT
TGGACATTCCAATGGTTCTTATAAAGCCTAAGGAGTCATGTTCCACAGCT
GAAGTTTACAAGTGTCTTCGACTAGATCAAACTAGTAAGGTTGATCCTTT
GGCATTGCTGGAGAAGATTTCAAGGAATGGAATATCCCAAGATGTCTGTA
TTAATGATTTGGAACCTCCTGCCTTTGAAGTTCTACCATCTCTTAAACGG
CTCAAGCAGCGTGTAACTGCAGCTGGTCGCGGACAATACGATGCTGTTTT
TATGTCTGGGAGTGGAAGCACCATTGTTGGAATCGGTTCCCCTGATCCTC
CACAATTTGTATATGATGATGATGATTATCGTGATGTATTTTTGTCAGAG
GCCAACTTTATTAACCGTGAAGAAAATGAGTGGTACAAAGAACTTACTTC
AGTGACTGCTTGTCAGCCCCCGGAAGCATCACAAACTCTTGAGTGA
back to top

protein sequence of Tc09v2_p020850.2

>Tc09v2_p020850.2 ID=Tc09v2_p020850.2|Name=Tc09v2_p020850.2|organism=Theobroma cacao|type=polypeptide|length=382bp
MASSHLLCDHSLFFPPSSKNSHLSITPQTKLQFRRTPFPKASKKQLEIVY
DPDERLNKLADEVDKQASFSRLTLFSPCKINVFLRITNKREDGYHDLASL
FHTVSLGDIIKFSLSPSKTKDRLSSNVSGVPLDDRNLIIKALNLYRKKTG
SNNFFWVHLDKKVPTGAGLGGGSSNAATALWAANQFNGCIATEKELQEWS
SEIGSDIPFFFSHGAAYCTGRGEVVQDIFPPLPLDIPMVLIKPKESCSTA
EVYKCLRLDQTSKVDPLALLEKISRNGISQDVCINDLEPPAFEVLPSLKR
LKQRVTAAGRGQYDAVFMSGSGSTIVGIGSPDPPQFVYDDDDYRDVFLSE
ANFINREENEWYKELTSVTACQPPEASQTLE*
back to top