Tc09v2_t020640.1

Overview
NameTc09v2_t020640.1
Unique NameTc09v2_t020640.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1080
Properties
Property NameValue
NoteUncharacterized protein isoform 1
Model evidenceSupporting evidence includes similarity to: 1 EST, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productuncharacterized LOC18589983
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589983
GenbankXM_018127254.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g020640Tc09v2_g020640Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p020640.1Tc09v2_p020640.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto464659auto464659Theobroma cacaoexon
exon-auto464660auto464660Theobroma cacaoexon
exon-auto464661auto464661Theobroma cacaoexon
exon-auto464662auto464662Theobroma cacaoexon
exon-auto464663auto464663Theobroma cacaoexon
exon-auto464664auto464664Theobroma cacaoexon
exon-auto464665auto464665Theobroma cacaoexon
exon-auto464666auto464666Theobroma cacaoexon
exon-auto464667auto464667Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto464668auto464668Theobroma cacaoCDS
CDS-auto464669auto464669Theobroma cacaoCDS
CDS-auto464670auto464670Theobroma cacaoCDS
CDS-auto464671auto464671Theobroma cacaoCDS
CDS-auto464672auto464672Theobroma cacaoCDS
CDS-auto464673auto464673Theobroma cacaoCDS
CDS-auto464674auto464674Theobroma cacaoCDS
CDS-auto464675auto464675Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t020640.1 ID=Tc09v2_t020640.1|Name=Tc09v2_t020640.1|organism=Theobroma cacao|type=mRNA|length=1080bp
ATGAAGCGCATTTCGCCACTCTTCTTGGCACTTTTAGTCCTAGGATTTCT
CTTTGCAACATATAATTTGTTGATTATGATAATACACTACAAGACCTCAA
GTTCAGAAAATTGGGATTCATCCGATCCTATTATTGGAATGCATGAGAAC
TTAAAAGAAGGTGGGGATTCTAACTCAAAGTACCATGTTGCTCTCACAGC
AACTGATGCTCCCTATAGCCAATGGCAGTGTCGCATTATGTATTATTGGT
ACAAGAAGGTAAAAGATATGCCCAGATCAGATATGGGAAAGTTTACTCGA
ATTTTGCATTCAGGGAAGCCTGATAGTTTGATGGAGGAGATTCCAACTGT
TATTGTTGATCCTCTTCCGGAGGGTTTAGATCGGGGTTATGTTGTCTTAA
ATAGACCATGGGCTTTTGTGCAATGGTTGGAAAAAGCAACAATTGATGAA
GAATATATTCTAATGGCAGAACCTGATCATGTATTTGTAAATCCTTTGCC
TAACTTAGCTCATGGAGACCATCCAGCAGGGTTCCCTTTTTTCTACATTA
AGCCAGCTAAACATGAGCATATTATTAGGAAGTATTATCCCAAGGAGAAG
GGTCCTGTGACAGATATTGATCCAATTGGAAATTCTCCTGTGATTATTAG
AAAGTCTGCACTGGAGGAAATCTCACCTACATGGATGAATGTTTCTTTAA
GAATGAAAGATGACCCTGCAACTGATAAGGCATTTGGATGGGTGCTAGAA
ATGTATGCATATGCTGTGGCATCAGCACTGCATGGTGTGCGGCACATACT
TCGTAAAGACTTCATGCTCCAGCCACCATGGGATTTGGAAGTAGGGAAGA
AGTTTATAATCCATTATACTTATGGATGTGACTACAATTTAAAGGGAGAA
TTAACATATGGAAAGATTGGAGAATGGCGTTTTGACAAGAGATCATATCT
TAGTGGGCCTCCACCAAGAAACCTCTCTCTGCCCCCTCCAGGTGTACCTG
AAAGTGTGGTGAGGCTTGTAAAGATGGTGAATGAGGGTACTGCCAATATT
CCCAATTGGGACACTTTAAATCGTGGCTGA
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protein sequence of Tc09v2_p020640.1

>Tc09v2_p020640.1 ID=Tc09v2_p020640.1|Name=Tc09v2_p020640.1|organism=Theobroma cacao|type=polypeptide|length=360bp
MKRISPLFLALLVLGFLFATYNLLIMIIHYKTSSSENWDSSDPIIGMHEN
LKEGGDSNSKYHVALTATDAPYSQWQCRIMYYWYKKVKDMPRSDMGKFTR
ILHSGKPDSLMEEIPTVIVDPLPEGLDRGYVVLNRPWAFVQWLEKATIDE
EYILMAEPDHVFVNPLPNLAHGDHPAGFPFFYIKPAKHEHIIRKYYPKEK
GPVTDIDPIGNSPVIIRKSALEEISPTWMNVSLRMKDDPATDKAFGWVLE
MYAYAVASALHGVRHILRKDFMLQPPWDLEVGKKFIIHYTYGCDYNLKGE
LTYGKIGEWRFDKRSYLSGPPPRNLSLPPPGVPESVVRLVKMVNEGTANI
PNWDTLNRG*
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