Tc09v2_t020400.2

Overview
NameTc09v2_t020400.2
Unique NameTc09v2_t020400.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1302
Properties
Property NameValue
NoteHydroxymethylglutaryl-CoA lyase, mitochondrial
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Producthydroxymethylglutaryl-CoA lyase, mitochondrial, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589957
GenbankXM_007015165.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g020400Tc09v2_g020400Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p020400.2Tc09v2_p020400.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto464112auto464112Theobroma cacaoexon
exon-auto464113auto464113Theobroma cacaoexon
exon-auto464114auto464114Theobroma cacaoexon
exon-auto464115auto464115Theobroma cacaoexon
exon-auto464116auto464116Theobroma cacaoexon
exon-auto464117auto464117Theobroma cacaoexon
exon-auto464118auto464118Theobroma cacaoexon
exon-auto464119auto464119Theobroma cacaoexon
exon-auto464120auto464120Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto464121auto464121Theobroma cacaoCDS
CDS-auto464122auto464122Theobroma cacaoCDS
CDS-auto464123auto464123Theobroma cacaoCDS
CDS-auto464124auto464124Theobroma cacaoCDS
CDS-auto464125auto464125Theobroma cacaoCDS
CDS-auto464126auto464126Theobroma cacaoCDS
CDS-auto464127auto464127Theobroma cacaoCDS
CDS-auto464128auto464128Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t020400.2 ID=Tc09v2_t020400.2|Name=Tc09v2_t020400.2|organism=Theobroma cacao|type=mRNA|length=1302bp
ATGTCAAGTTTGGAGGAGCCACTCGGTTTTGACAAGCTGCCTAGCATGAG
TACTATTGATAGGATTCAGAGGTTCTCAGCTGGTGCTTGTCGGCCTAGAG
GAGAAGATATGGGCATGGGAACCTGCTGGATTGAAGGGAGGAGTTGCAGC
ACATCTAATAGTTGTGATGAGGATTATGAAGAATACACAGGGGAGGCATT
CCCATGGAGAAGACATGTGAGGGATGTGTCTGAAGGTGAAGCGTTCAACA
GAAGGGCTTCAAGTCTAAGCAAGAATCGCATGAAATGCAGACATGTTTGT
GACTCGAGGTATTTGCCAGATCTTCAGTATAGGTCCAAGTGCAATGGCAG
AGGTGTACGAGGCATAACAAATAAGTTTTTAAAAGATATACCAAAGTTTG
TGAAGATAGTAGAAGTTGGTCCGAGGGATGGATTACAAAATGAGAAGAAT
ATTGTACCTACGTCTGTAAAGGTTGAATTGATTCGGAGATTGGTGTCTTC
AGGGTTGACCGTTGTTGAAGCTACAAGTTTTGTGTCTCCTAAATGGGTTC
CTCAGCTAGCAGATGCAAAAGATGTAATGAAAGCAGTTCGTGACATGGAG
GATGCCAGATTGCCCGTTCTCACTCCTAATCTAAAGGGCTTTGAAGCAGC
TGTTGCAGCGGGTGCAAAAGAAGTAGCTGTCTTTGCATCTGCTTCTGAGT
CCTTTTCAAAGTCAAACATTAATTGTAGCATCGAAGAAAGCCTTGTCCGC
TACCGTGCTGTCTGTGCTGCTGCTAAGGAGCTTTCAGTTCCTGTTCGTGG
GTATGTATCATGTGCGGTTGGATGTCCAGTGGAAGGAGCAATTCCTCCAT
CGAAAGTGGCCTATGTGGCAAAGGAACTTTACAATATGGGTTGTTTTGAA
ATTTCCCTTGCTGATACAATTGGAGTTGGCACCCCTGGTACTGTGGTTCC
CATGCTTGAAGCAGTAATGGCGGTTGTTTCTGCTGAAAAGCTTGCTGTCC
ACTTCCATGACACTTATGGGCAATCTCTTCCAAATATATTAGTTTCTCTC
CAGATGGGGATTAGCACAGTGGATTCATCGGTAGCAGGTTTGGGTGGTTG
TCCGTACGCCAAGGGAGCTTCAGGGAATGTTGCCACTGAGGATGTGGTGT
ATATGCTTAACGGCCTTGGTGTCAAAACAAACGTGGATCTGGCGAAGCTC
AAGTTGGCTGGGGATTTCATCAGCGACCATCTGGGTCGCCAATCTGGTTC
CAAGACCGCTATTGCTTTGGGCCGGGTAACAGCCGATGCCTCCAAGATAT
AA
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protein sequence of Tc09v2_p020400.2

>Tc09v2_p020400.2 ID=Tc09v2_p020400.2|Name=Tc09v2_p020400.2|organism=Theobroma cacao|type=polypeptide|length=434bp
MSSLEEPLGFDKLPSMSTIDRIQRFSAGACRPRGEDMGMGTCWIEGRSCS
TSNSCDEDYEEYTGEAFPWRRHVRDVSEGEAFNRRASSLSKNRMKCRHVC
DSRYLPDLQYRSKCNGRGVRGITNKFLKDIPKFVKIVEVGPRDGLQNEKN
IVPTSVKVELIRRLVSSGLTVVEATSFVSPKWVPQLADAKDVMKAVRDME
DARLPVLTPNLKGFEAAVAAGAKEVAVFASASESFSKSNINCSIEESLVR
YRAVCAAAKELSVPVRGYVSCAVGCPVEGAIPPSKVAYVAKELYNMGCFE
ISLADTIGVGTPGTVVPMLEAVMAVVSAEKLAVHFHDTYGQSLPNILVSL
QMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVKTNVDLAKL
KLAGDFISDHLGRQSGSKTAIALGRVTADASKI*
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