Tc09v2_t020020.1

Overview
NameTc09v2_t020020.1
Unique NameTc09v2_t020020.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length537
Properties
Property NameValue
NoteUbiquitin-conjugating enzyme E2 19
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productubiquitin-conjugating enzyme E2 20
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589908
GenbankXM_007015091.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g020020Tc09v2_g020020Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p020020.1Tc09v2_p020020.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto463164auto463164Theobroma cacaoexon
exon-auto463165auto463165Theobroma cacaoexon
exon-auto463166auto463166Theobroma cacaoexon
exon-auto463167auto463167Theobroma cacaoexon
exon-auto463168auto463168Theobroma cacaoexon
exon-auto463169auto463169Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto463170auto463170Theobroma cacaoCDS
CDS-auto463171auto463171Theobroma cacaoCDS
CDS-auto463172auto463172Theobroma cacaoCDS
CDS-auto463173auto463173Theobroma cacaoCDS
CDS-auto463174auto463174Theobroma cacaoCDS
CDS-auto463175auto463175Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t020020.1 ID=Tc09v2_t020020.1|Name=Tc09v2_t020020.1|organism=Theobroma cacao|type=mRNA|length=537bp
ATGGCAACTGTTAATGGGTACCAGGGAAACACCCCAGTGGCCACCAGCAC
TGGAACAAAGCAGTCTGCCCCCACTGCTAAGACTGTTGATTCTCAATCAG
TTCTTAAAAGGTTGCAATCTGAATTGATGGCTTTGATGATGAGTGGAGAT
TCTGGTATATCAGCATTTCCTGAAGAGGACAACATATTTTGCTGGAAAGG
AACAATTACAGGAAGCAAAGACACTGTCTTTGAAGGAACAGAATACAGGC
TCTCTCTTGCATTCCCCAATGATTACCCTTTTAAGCCGCCAAAGGTCAAG
TTTGAGACTGGTTGCTTTCATCCCAATGTTGATGTCTATGGCAACATTTG
CTTGGACATTCTTCAGGATAAATGGTCATCTGCTTATGATGTAAGAACCA
TACTGCTATCTATCCAGAGTCTGCTTGGAGAACCAAACATTAGCTCTCCT
CTAAACACTCAAGCAGCTCAACTTTGGAGCAATCAAGAAGAGTATAGGAA
GATGGTTGAGAAGTTGTACAAAGCTCCTAATGCATGA
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protein sequence of Tc09v2_p020020.1

>Tc09v2_p020020.1 ID=Tc09v2_p020020.1|Name=Tc09v2_p020020.1|organism=Theobroma cacao|type=polypeptide|length=179bp
MATVNGYQGNTPVATSTGTKQSAPTAKTVDSQSVLKRLQSELMALMMSGD
SGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLAFPNDYPFKPPKVK
FETGCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSP
LNTQAAQLWSNQEEYRKMVEKLYKAPNA*
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