Tc09v2_t019850.1

Overview
NameTc09v2_t019850.1
Unique NameTc09v2_t019850.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length939
Properties
Property NameValue
NoteTranscription initiation factor IIB
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Producttranscription initiation factor IIB
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589886
GenbankXM_007015058.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g019850Tc09v2_g019850Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p019850.1Tc09v2_p019850.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto462752auto462752Theobroma cacaoexon
exon-auto462753auto462753Theobroma cacaoexon
exon-auto462754auto462754Theobroma cacaoexon
exon-auto462755auto462755Theobroma cacaoexon
exon-auto462756auto462756Theobroma cacaoexon
exon-auto462757auto462757Theobroma cacaoexon
exon-auto462758auto462758Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto462759auto462759Theobroma cacaoCDS
CDS-auto462760auto462760Theobroma cacaoCDS
CDS-auto462761auto462761Theobroma cacaoCDS
CDS-auto462762auto462762Theobroma cacaoCDS
CDS-auto462763auto462763Theobroma cacaoCDS
CDS-auto462764auto462764Theobroma cacaoCDS
CDS-auto462765auto462765Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t019850.1 ID=Tc09v2_t019850.1|Name=Tc09v2_t019850.1|organism=Theobroma cacao|type=mRNA|length=939bp
ATGGCTGACTCTTTCTGCCCAGATTGCAAGCGTCCAACCGAAGTTGTCTT
CGACCACTCAGCCGGAGACACTGTCTGCTCCGAGTGCGGTCTTGTTCTTG
AGGCTCATTCCATAGACGAGACCTCTGAGTGGCGAACCTTTGCCAATGAG
TCTGGGGACAATGACCCAGTTCGTGTCGGCGGTCCTTCTAATCCTCTTTT
GGCCGATGGTGGCCTCTCTACCGTCATTTCCAAACCTAATGGCTCCTCTG
GTGATTTCTTGACATCCTCTTTGGGACGCTGGCAGAACCGCGGGGCAAAC
CCGGATCGTTCCCTTATCCAGGCCTTTAAGACCATTGCCACCATGTCTGA
CAGGTTGGGCCTTGTTGCAACCATTAAGGATCGAGCCAACGAAATATATA
AGAAAGTTGAAGATCAGAAACCTCTTAGAGGCCGAAACCAGGATGCAATT
TTGGCTGCTTGCCTCTATATTGCCTGTAGGCAAGAAGACAAACCCCGCAC
CGTAAAAGAAATATGCTCTGTTGCCAATGGAGCCACAAAGAAAGAAATTG
GTCGTGCAAAAGAGTATATCGTGAAGCAATTGGAGGTGGAGATGGGTCAA
TCCATGGAAATGGGAACAATACATGCTGGGGACTTTCTGAGACGTTTCTG
CTCCCATCTTGGTATGAGTAATCAAACAGTTAAGGCTGCTCAAGAAGCTG
TACAAAAATCTGAAGAGCTGGATATAAGGAGAAGCCCAATATCAATTGCA
GCTGCTGTCATTTACATAATAACCCAACTGTCAGACGATAAGAAGCTTCT
CAAAGATATATCTCTAGCAACAGGAGTGGCTGAAGGGACCATTAGAAATT
CCTACAAGGACCTCCATCCCCATGCTTCGAAGCTTGTACCAAGCTGGTAT
GCCAAAAAGGAAGACCTTAAGAATCTCTGCAGTCCTTAA
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protein sequence of Tc09v2_p019850.1

>Tc09v2_p019850.1 ID=Tc09v2_p019850.1|Name=Tc09v2_p019850.1|organism=Theobroma cacao|type=polypeptide|length=313bp
MADSFCPDCKRPTEVVFDHSAGDTVCSECGLVLEAHSIDETSEWRTFANE
SGDNDPVRVGGPSNPLLADGGLSTVISKPNGSSGDFLTSSLGRWQNRGAN
PDRSLIQAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKPLRGRNQDAI
LAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLEVEMGQ
SMEMGTIHAGDFLRRFCSHLGMSNQTVKAAQEAVQKSEELDIRRSPISIA
AAVIYIITQLSDDKKLLKDISLATGVAEGTIRNSYKDLHPHASKLVPSWY
AKKEDLKNLCSP*
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