Tc09v2_t019790.1

Overview
NameTc09v2_t019790.1
Unique NameTc09v2_t019790.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1104
Properties
Property NameValue
NoteCaffeic acid 3-O-methyltransferase
Model evidenceSupporting evidence includes similarity to: 30 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Productcaffeic acid 3-O-methyltransferase, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589881
GenbankXM_018127045.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g019790Tc09v2_g019790Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p019790.1Tc09v2_p019790.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto462646auto462646Theobroma cacaoexon
exon-auto462647auto462647Theobroma cacaoexon
exon-auto462648auto462648Theobroma cacaoexon
exon-auto462649auto462649Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto462650auto462650Theobroma cacaoCDS
CDS-auto462651auto462651Theobroma cacaoCDS
CDS-auto462652auto462652Theobroma cacaoCDS
CDS-auto462653auto462653Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t019790.1 ID=Tc09v2_t019790.1|Name=Tc09v2_t019790.1|organism=Theobroma cacao|type=mRNA|length=1104bp
ATGGGATATTCAGTAGAAACCCAGTTTCATGGCAACAACGACCATTCAGA
GCAAGATGAAGAAAGTTTTTCATGTGCCATGCAACTTGTCAATTCCACTG
CGTTGCCAATGTCTTTACATGCGGCAATTCAGCTGGAAATCTTTGAGATC
ATAGCGAAAGCTGGTCCAGATGCCAAGCTATCCCCGCAAGAGATAGGAGC
TCACTTACCAACCCAGAACCCAGATGCGCCCATGATGCTGGACAGCATAC
TTAGACTTCTAGCCAGCCACAGCGTTCTTGCCTGCTCTCTGGCTGTTGTT
GAACAGGGTGATTCCCCGCAGAGGCTCTATAGTTTGACGCCTGTGACCAA
ATTCTTCATTAGAAATGAAGACGGTGTTTCATTGGCTCCTTTGGTGTCCT
TGGTTCAGGACAAGATCTTTCTTGATAGCTGGTGCCAACTGAAGGATGCA
ATTCTTGAAGGAGGAATTCCATTTAACAGGGTCCATGGAACGCACGCGTT
TGAATACCCAGGCAAGGACCCAAGGTTCAACAAAATTTTCAATACTGCAA
TGATGAATCAAACCACTATTGTCATGAAGAAGATCCTGGAGGCCTACAAG
GGCTTTGAACACCTCAGCCAATTGGTTGATGTTGGTGGTGGTCTTGGAGT
TACCCTTCGCATCATCACTTCCAAATACCCTTCCATTAAGGGGATCAATT
TCGACCAGCCCCATGTTATACGACATGCCCCGGCCTACCCTGGCGTTGAA
CATGTTGGGGGAGATATGTTTAAAAGTGTTCCTAAAGGAGATACCGTTTT
TATGAAGTGGATACTTCATGACTGGAGCGATGATCATTGTTTGAAGCTAT
TAAAGAACTGTTACAAAGCCATTCCGGATGATGGAAAAGTAATTGTGATT
GATTCTGTCCTTCCAGTATTACCCGAGAGTAATGCGGCTTCGAAAGCCAA
TTCAGAACTAGATGTGGTTATGATGACTCAGAATCCGGGAGGGAAGGAAC
GGACAAAGCCAGAATTGGAAGCCTTGGCAACTATGGCTGGATTTAGTGGC
ATCAGATATGAGTGTTTCGTTTGTAACTGTTGGGTCATGGAGTTCTTCAA
GTAG
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protein sequence of Tc09v2_p019790.1

>Tc09v2_p019790.1 ID=Tc09v2_p019790.1|Name=Tc09v2_p019790.1|organism=Theobroma cacao|type=polypeptide|length=368bp
MGYSVETQFHGNNDHSEQDEESFSCAMQLVNSTALPMSLHAAIQLEIFEI
IAKAGPDAKLSPQEIGAHLPTQNPDAPMMLDSILRLLASHSVLACSLAVV
EQGDSPQRLYSLTPVTKFFIRNEDGVSLAPLVSLVQDKIFLDSWCQLKDA
ILEGGIPFNRVHGTHAFEYPGKDPRFNKIFNTAMMNQTTIVMKKILEAYK
GFEHLSQLVDVGGGLGVTLRIITSKYPSIKGINFDQPHVIRHAPAYPGVE
HVGGDMFKSVPKGDTVFMKWILHDWSDDHCLKLLKNCYKAIPDDGKVIVI
DSVLPVLPESNAASKANSELDVVMMTQNPGGKERTKPELEALATMAGFSG
IRYECFVCNCWVMEFFK*
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