Tc09v2_t019280.4

Overview
NameTc09v2_t019280.4
Unique NameTc09v2_t019280.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3456
Properties
Property NameValue
NoteXanthine dehydrogenase 1
Model evidenceSupporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Productxanthine dehydrogenase 1, transcript variant X4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589817
GenbankXM_007014959.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g019280Tc09v2_g019280Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p019280.4Tc09v2_p019280.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto461653auto461653Theobroma cacaoexon
exon-auto461654auto461654Theobroma cacaoexon
exon-auto461655auto461655Theobroma cacaoexon
exon-auto461656auto461656Theobroma cacaoexon
exon-auto461657auto461657Theobroma cacaoexon
exon-auto461658auto461658Theobroma cacaoexon
exon-auto461659auto461659Theobroma cacaoexon
exon-auto461660auto461660Theobroma cacaoexon
exon-auto461661auto461661Theobroma cacaoexon
exon-auto461662auto461662Theobroma cacaoexon
exon-auto461663auto461663Theobroma cacaoexon
exon-auto461664auto461664Theobroma cacaoexon
exon-auto461665auto461665Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto461666auto461666Theobroma cacaoCDS
CDS-auto461667auto461667Theobroma cacaoCDS
CDS-auto461668auto461668Theobroma cacaoCDS
CDS-auto461669auto461669Theobroma cacaoCDS
CDS-auto461670auto461670Theobroma cacaoCDS
CDS-auto461671auto461671Theobroma cacaoCDS
CDS-auto461672auto461672Theobroma cacaoCDS
CDS-auto461673auto461673Theobroma cacaoCDS
CDS-auto461674auto461674Theobroma cacaoCDS
CDS-auto461675auto461675Theobroma cacaoCDS
CDS-auto461676auto461676Theobroma cacaoCDS
CDS-auto461677auto461677Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t019280.4 ID=Tc09v2_t019280.4|Name=Tc09v2_t019280.4|organism=Theobroma cacao|type=mRNA|length=3456bp
ATGGGGTCTTTGAAGAACGAAGAAGAGATGGAGCAGATTGTGGAGGAATC
CAAGGAGGCCATTTTATACGTTAATGGAGTCCGCAAAGTGTTGCCTGATG
GATTAGCTCACTTGACATTACTTGAGTACCTCAGAGACATTGGATTGACA
GGGACAAAGCTTGGCTGTGGTGAAGGTGGTTGTGGGGCTTGCACTGTGAT
GATTTCTCATTATGATAGAAAGCTGAAGAAATGTGTGCATTATGCTGTCA
ATGCATGCTTGGCTCCACTTTATTCAGTAGAAGGAATGCATGTTATTACA
GTGGAGGGAGTTGGGAACCACAAACGTGGCTTGCACCCTATACAAAAATC
ATTGGAACGTTATCATGGCTCCCAATGTGGATTTTGCACTCCTGGATTTA
TCATGTCATTGTATGCATTGTTGCGGTCAAGTCAAACACCTCCTACTGAA
GAGCAAATTGAAGAATCTCTTGCGGGAAACTTATGTCGTTGCACTGGTTA
CCGACCTATTGTTGATGCATTTCGAGTTTTTGCCAAGACCGATGATGCAT
TATATGCTGATATATCTTCACTTAGCCTTCAGGGAGGTGAGTTTGTTTGT
CCTTCAACGGGTAAGCCCTGTTCATGTGGATCGAAAACTGTAAATGATAT
AGACACCAATGGCCAAAGTATTTGTAGTGCTACGTATAAACCTGTCTCTT
ACAGTGAGGTAGATGGAAGCACATATACAGATAAAGAACTTATTTTTGCT
CCTGAGCTGTTACTAAGAAAATTAACTCCTTTAAGTTTGAGTGGATTGGG
TGGGCTTAAATGGTATCGTCCCTTAACAGTTAAATACGTGCTTGAGTTGA
AGGAGAAATACCCAAATGCGAAATTGTTGGTAGGTAATACTGAGGTTGGT
GTTGAGATGAGGTTGAAGAGAATTCAATATCAAGTTTTTATCTCTGTTAC
ACATGTTCCTGAACTCAACATGTTAAATGTCAAGGAAGATGGTATAGAGA
TAGGTGCTGCAGTAAGACTGACTGAACTCTTGAATTTATTAAGAGAGGTT
GTAACTCAACACCCTGCTCACGAAACATCCGCATGCAAAGCCTTCATTGA
ACAGTTGAAGTGGTTTGCTGGGACTCAGATAAAAAATGTTGCATCTGTCG
GAGGAAATGTATGTACAGCTAGCCCAATTTCAGACTTGAACCCTCTCTGG
ATGGCTGCAAGAGCTAAGTTTCGGATCATTAATTGCAAAGGAAATATTAG
AACTGCTCTGGCAGAAAAATTTTTCCTTGGCTACCGTAAAGTGGATTTGG
CAGGTGATGAAATATTATTGTCAGTATTCTTACCTTGGACTAGGTGCTTT
GAGTACGTCAAAGAATTTAAGCAGGCACATCGAAGGGATGATGATATTGC
CATTGTGAATGCTGGAATGCGTGTTTGTCTGGAGGAAAAAGGTGAAGAGT
GGGTTGTTTCAGATGCATCGATTGCTTATGGTGGGGTGGCACCTCTCTCT
TTATGTGCAATTAAAACAAAAGAATTTCTAATTGGAAAGAAATGGAACCA
GGATGTGCTACGGGGTGCTTTGAATGTCCTACGAACTGATATTTTGATCA
AGGAAGATGCTCCTGGTGGGATGGTGGAGTTTCGAAAGTCTTTGACCCTT
AGCTTCTTCTTTAAATTTTTCCTTTGGGTTTTGCATCAAATTGAGGGAAA
GAAACCTATTAAGGAAAAAGTATTGTTATCTCATTTGTCAGCTATAAAGT
CACTTCACCGCCCACCATTAGTAGCAAGTCAAGACTATGAAATCAAGAAA
CATGGAACATCTGTAGGGTCACCAGAGGTTCATCTATCATCCAGGCTTCA
GGTTACTGGAGAGGCAGAATATACTGATGACACACCAATGCCTCCTAATG
GTTTGCATGCAGCATTTGTGTTGAGCAAAAAACCTCATGCTCGAATATTA
GCCATTGACGATTCAGGTGCCAAGTCTTCACCCGGATTTGCTGGCATCTT
CTTTGCCAAGGATGTTCCTGGTAGCAATGAAATTGGACCAGTTGTCATGG
ATGAGGAGCTATTTGCTTCAGAATTTGTCACTTGTGTGGGTCAGGTTATA
GGAGTGGTTGTGGCTGACACCCATGAAAATGCAAAACGAGCAGCAGGAAA
AGTTCATGTGGAGTATGAAGAGCTCCCTGCTATCTTGTCAATAGAGGATG
CAGTCAGTGCCAAAAGCTTTCATCCCAACACAGAGAAGCTTCTGAGAAAA
GGGGATGTAGATCTCTGTTTCCAATCAGATCAATGTGACAAGATCATTGA
GGGAAAAGTTCAAGTGGGTGGTCAGGAACACTTCTACTTAGAGCCACATA
GCAGCTTAGTTTGGACCATGGACGGTGGCAATGAAGTTCATATGATTTCA
TCCACTCAAGCCCCTCAGAAGCACCAGAAATATGTTTCTCATGTCCTTGG
TCTTCCAATGTCGAAAGTAGTTTGTAAAACCAAAAGGATTGGTGGTGGAT
TTGGTGGAAAGGAGACTAGATCAGCTTTCCTCGCTGCTGCTGCTGCTATT
CCATCTTATCTGATGAATAGGCCAGTGAAAATAACACTAGATAGAGATAT
TGACATGATGACATCGGGGCAGCGCCATAGCTTTCTTGGAAAGTACAAGG
TTGGATTTACAAATAATGGAAAGGTGCTGGCTTTGGATCTTCAAATCTAC
AATAATGCTGGAAATTCACTAGACTTGTCTCTTGCCATACTTGAACGTGC
TATGTTTCACTCAGACAATGTCTATGAGATACCGAATGTCAGAATTTTTG
GAAGTGTTTGTTTCACTAATTTTCCAAGCCATACTGCTTTCCGGGGGTTT
GGTGGTCCTCAAGGTATGCTTATAGCTGAGAATTGGATTCAAAGAATTGC
TTTAGAACTTAAGAAGAGTCCAGAAGAGATAAGGGAGATGAACTTTCAAG
GTGAAGGATCAATATTGCATTATGGTCAACAATTGGAACACTGTCCTCTG
GCTCAGCTGTGGAATGAGCTGAAATTATCTTGCGACTTTCTGAAGGCTCG
AGATGAAGTCGATCAATTTAATCTTCACAATCGATGGAAGAAGCGTGGTG
TTGCTATGATTCCAACAAAATTTGGCATATCCTTTACGACTAAGTTCATG
AATCAGGCAGGAGCTCTTGTTAATGTCTACACTGATGGAACTGTTTTAGT
TACACATGGAGGTGTTGAGATGGGGCAAGGTTTGCACACAAAAGTTGCTC
AAGTTGCAGCGTCTGCCTTCAATATCTCTCTCAGTTCTGTCTTTATATCA
GAGACAAGTACTGACAAGGTTCCTAATGCTTCTCCAACAGCAGCTTCTGC
TAGTTCTGATATGTATGCAGCTGCAGTTTTGGATGCATGCGAGCAGATCA
AGGCACGGATGGAGCCTATTGCTTCTCAACGTAATTTTAGTTCTTTTGCT
GAGTAG
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protein sequence of Tc09v2_p019280.4

>Tc09v2_p019280.4 ID=Tc09v2_p019280.4|Name=Tc09v2_p019280.4|organism=Theobroma cacao|type=polypeptide|length=1152bp
MGSLKNEEEMEQIVEESKEAILYVNGVRKVLPDGLAHLTLLEYLRDIGLT
GTKLGCGEGGCGACTVMISHYDRKLKKCVHYAVNACLAPLYSVEGMHVIT
VEGVGNHKRGLHPIQKSLERYHGSQCGFCTPGFIMSLYALLRSSQTPPTE
EQIEESLAGNLCRCTGYRPIVDAFRVFAKTDDALYADISSLSLQGGEFVC
PSTGKPCSCGSKTVNDIDTNGQSICSATYKPVSYSEVDGSTYTDKELIFA
PELLLRKLTPLSLSGLGGLKWYRPLTVKYVLELKEKYPNAKLLVGNTEVG
VEMRLKRIQYQVFISVTHVPELNMLNVKEDGIEIGAAVRLTELLNLLREV
VTQHPAHETSACKAFIEQLKWFAGTQIKNVASVGGNVCTASPISDLNPLW
MAARAKFRIINCKGNIRTALAEKFFLGYRKVDLAGDEILLSVFLPWTRCF
EYVKEFKQAHRRDDDIAIVNAGMRVCLEEKGEEWVVSDASIAYGGVAPLS
LCAIKTKEFLIGKKWNQDVLRGALNVLRTDILIKEDAPGGMVEFRKSLTL
SFFFKFFLWVLHQIEGKKPIKEKVLLSHLSAIKSLHRPPLVASQDYEIKK
HGTSVGSPEVHLSSRLQVTGEAEYTDDTPMPPNGLHAAFVLSKKPHARIL
AIDDSGAKSSPGFAGIFFAKDVPGSNEIGPVVMDEELFASEFVTCVGQVI
GVVVADTHENAKRAAGKVHVEYEELPAILSIEDAVSAKSFHPNTEKLLRK
GDVDLCFQSDQCDKIIEGKVQVGGQEHFYLEPHSSLVWTMDGGNEVHMIS
STQAPQKHQKYVSHVLGLPMSKVVCKTKRIGGGFGGKETRSAFLAAAAAI
PSYLMNRPVKITLDRDIDMMTSGQRHSFLGKYKVGFTNNGKVLALDLQIY
NNAGNSLDLSLAILERAMFHSDNVYEIPNVRIFGSVCFTNFPSHTAFRGF
GGPQGMLIAENWIQRIALELKKSPEEIREMNFQGEGSILHYGQQLEHCPL
AQLWNELKLSCDFLKARDEVDQFNLHNRWKKRGVAMIPTKFGISFTTKFM
NQAGALVNVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNISLSSVFIS
ETSTDKVPNASPTAASASSDMYAAAVLDACEQIKARMEPIASQRNFSSFA
E*
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