Tc09v2_t018700.2

Overview
NameTc09v2_t018700.2
Unique NameTc09v2_t018700.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1317
Properties
Property NameValue
NotePutative Berbamunine synthase
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Product(S)-N-methylcoclaurine 3'-hydroxylase isozyme 1, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589745
GenbankXM_007014857.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g018700Tc09v2_g018700Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p018700.2Tc09v2_p018700.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto460705auto460705Theobroma cacaoexon
exon-auto460706auto460706Theobroma cacaoexon
exon-auto460707auto460707Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto460708auto460708Theobroma cacaoCDS
CDS-auto460709auto460709Theobroma cacaoCDS
CDS-auto460710auto460710Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t018700.2 ID=Tc09v2_t018700.2|Name=Tc09v2_t018700.2|organism=Theobroma cacao|type=mRNA|length=1317bp
ATGGATTTGTTGCATTCTTCCATCTTAAGCGTGATTGCCCATTTTTCTTC
CCTTGTTTCTGGCTCCATGACGATCCTAGCAGTAACAATGTCGATTGCTT
CCTATTTTCTTATCCCTATCCTCCTAGGCGGTCGCTCTAAAAATTGGAAG
AATGCACCACCAGGCCCTGTTGGTTGGCCCATCCTCGGAAGCCTTCCGCA
CCTCAGCCATCGTCTCCATGAAGATTTCTTTCACCTTGCCAAAATCCATG
GCCCACTATTCTGTCTGAAGATGGGCATCAAGCCAGCCATAGTGATTTCC
TCGCCAGAAATGGCATCCGAAATCCTCAAGGAAAAGGAAGGCATGTTCTC
TAGTCGTACCATAACCGAAGCCATTCGAGTCGTCTCTTACGATGCTCATT
CCATCATTTTCTCGCCCTACGGACCGAGGTGGAAGGCTCTTCGAAGAATC
TTGATCACTGAACTACTTTCTCCAAAAGCCTTCGAGCAATTCGAGCCGGT
TCGCACCACACAGGTCCATGGTTTGCTCAAGTATCTATACATACTCTCAA
AGTCGAGCACTCAAGTGAATATAGCAGAATCAGCTTTTACGGCATTGGCC
AACCTTGTGAGTAATATTTTATGCTCCAAAAGCCTTTTCGACAACTCAAA
GCCTGAAGGAAGAAAAATGAAAGAGATGTTCTGGGAGATGATAAAGGAAA
TGTTTATTGCAGGAACAGAGACAACCTCAAGCACTGTGGAATGGGGCATG
ACAGAAATACTAAGGAAACCTTCTGTTCACAAGAAACTACTACTCGAACT
GGACCAAGTAGTTGGAAAGAACAGATTTGTGGTGGAGAGTGATATCCCAA
ACCTGCCATACCTTCAAGCAACTGTTAAAGAAGTTTTCAGACTGCATCCT
GGAGTTCCGCTCATCATCCCTCGTCGTACCAATGAGGCATGTGAAGTAGC
TGGCTATCATATTCCGAAGCATTGCATCGTCTATGTGAATATCTGGGGAA
TAGCAAGGGATCCCAAAGTGTGGGAAGATCCTTTAGAATTCAAGCCTGAG
AGGTTCATTGGGTCGAGTGTAGATGTGAAAGGTCAAGACTTTAATCTCCT
GCCTTTCGGGACAGGGAGAAGGTCTTGTGTCGGATGGCCTCTTGCTCATC
GGATGGTGCATTATTACTTGGCTGCGTTACTCCATGCTTTTGAATGGGAC
TCTCCTCCTGAGATTTTAAGGGATATGAACGAGAGGGTTGGCCTTACTCT
TCAGAAAGACAAGAGCTTGCTTGGCACTCCCAAACCTCGACTGCAAGCTT
CTGTTTATGAGCATTAG
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protein sequence of Tc09v2_p018700.2

>Tc09v2_p018700.2 ID=Tc09v2_p018700.2|Name=Tc09v2_p018700.2|organism=Theobroma cacao|type=polypeptide|length=439bp
MDLLHSSILSVIAHFSSLVSGSMTILAVTMSIASYFLIPILLGGRSKNWK
NAPPGPVGWPILGSLPHLSHRLHEDFFHLAKIHGPLFCLKMGIKPAIVIS
SPEMASEILKEKEGMFSSRTITEAIRVVSYDAHSIIFSPYGPRWKALRRI
LITELLSPKAFEQFEPVRTTQVHGLLKYLYILSKSSTQVNIAESAFTALA
NLVSNILCSKSLFDNSKPEGRKMKEMFWEMIKEMFIAGTETTSSTVEWGM
TEILRKPSVHKKLLLELDQVVGKNRFVVESDIPNLPYLQATVKEVFRLHP
GVPLIIPRRTNEACEVAGYHIPKHCIVYVNIWGIARDPKVWEDPLEFKPE
RFIGSSVDVKGQDFNLLPFGTGRRSCVGWPLAHRMVHYYLAALLHAFEWD
SPPEILRDMNERVGLTLQKDKSLLGTPKPRLQASVYEH*
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