Tc09v2_t018670.2

Overview
NameTc09v2_t018670.2
Unique NameTc09v2_t018670.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length966
Properties
Property NameValue
NoteCell differentiation, Rcd1-like protein isoform 1
Productcell differentiation protein RCD1 homolog, transcript variant X1
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589742
GenbankXM_018127138.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g018670Tc09v2_g018670Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p018670.2Tc09v2_p018670.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto460632auto460632Theobroma cacaoexon
exon-auto460633auto460633Theobroma cacaoexon
exon-auto460634auto460634Theobroma cacaoexon
exon-auto460635auto460635Theobroma cacaoexon
exon-auto460636auto460636Theobroma cacaoexon
exon-auto460637auto460637Theobroma cacaoexon
exon-auto460638auto460638Theobroma cacaoexon
exon-auto460639auto460639Theobroma cacaoexon
exon-auto460640auto460640Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto460641auto460641Theobroma cacaoCDS
CDS-auto460642auto460642Theobroma cacaoCDS
CDS-auto460643auto460643Theobroma cacaoCDS
CDS-auto460644auto460644Theobroma cacaoCDS
CDS-auto460645auto460645Theobroma cacaoCDS
CDS-auto460646auto460646Theobroma cacaoCDS
CDS-auto460647auto460647Theobroma cacaoCDS
CDS-auto460648auto460648Theobroma cacaoCDS
CDS-auto460649auto460649Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t018670.2 ID=Tc09v2_t018670.2|Name=Tc09v2_t018670.2|organism=Theobroma cacao|type=mRNA|length=966bp
ATGCAAATGGTGAATCTACCCCAATCTCTGTCGATGAACACGCCTTTTGG
GGGACCCACATCGTCGAATCCAACTGCCGCCGGAGCTCCGGCTAATAAGG
ATAGGAAAATGGCATCGGCTGAGCATTTGGTTCTCGATCTGAGCAATCCC
GATCTCCGAGAAAACGCTCTTCTCGAACTATCCAAGAAGAGAGAATTATT
TCAAGATTTGGCTCCATTGTTGTGGAATTCTTTTGGTACTATTGCTGCAC
TTTTACAGGAGATAGTTTCAATTTATCCTGTTCTCTCACCACCAAATCTA
ACTCCAGCACAATCAAATCGAGTTTGCAATGCTCTTGCTCTACTTCAGTG
TGTAGCTTCTCATCCAGACACAAGGATGTTATTCCTAAATGCTCATATAC
CGTTGTATCTGTATCCTTTCCTTAATACAACAAGTAAATCAAGGCCTTTT
GAGTACTTGAGGCTTACTAGCTTAGGTGTCATTGGTGCCTTGGTGAAGGT
TGATGATACGGAAGTTATTAGCTTCCTTCTTTCAACAGAGATAATCCCGC
TATGCCTGCGCACAATGGAGATGGGTAGTGAACTGTCGAAAACAGTTGCC
ACTTTTATAGTTCAAAAGATTCTATTAGATGATGTTGGCTTGGACTATAT
TTGCACTACGGCTGAGCGGTTTTTTGCAGTTGGTCGAGTTTTGGGAAATA
TGGTTGCAGCACTTGCTGAGCAACCCTCTTCACGACTGTTAAAACATATT
ATTCGATGTTATCTTCGATTGTCAGATAACCCTAGGGCTTGTGATGCGCT
AAGAAGTTGCCTTCCAGATATGTTACGAGATGCCACCTTTAGTACTTGCC
TTCGTGAAGATCAAACCACTAGAAGGTGGCTGCAGCAGTTGCTTCACAAT
GTTGGGGTGAACCGGGTGCCAACCCTGCAGGCTGGTGGGGGATTTGATCA
CATGCTGGTTAACTGA
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protein sequence of Tc09v2_p018670.2

>Tc09v2_p018670.2 ID=Tc09v2_p018670.2|Name=Tc09v2_p018670.2|organism=Theobroma cacao|type=polypeptide|length=322bp
MQMVNLPQSLSMNTPFGGPTSSNPTAAGAPANKDRKMASAEHLVLDLSNP
DLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNL
TPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPF
EYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVA
TFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHI
IRCYLRLSDNPRACDALRSCLPDMLRDATFSTCLREDQTTRRWLQQLLHN
VGVNRVPTLQAGGGFDHMLVN*
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