Tc09v2_t017520.1

Overview
NameTc09v2_t017520.1
Unique NameTc09v2_t017520.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length531
Properties
Property NameValue
NoteConstitutive photomorphogenesis protein 10
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productconstitutive photomorphogenesis protein 10
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589586
GenbankXM_007014625.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g017520Tc09v2_g017520Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p017520.1Tc09v2_p017520.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto458436auto458436Theobroma cacaoexon
exon-auto458437auto458437Theobroma cacaoexon
exon-auto458438auto458438Theobroma cacaoexon
exon-auto458439auto458439Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto458440auto458440Theobroma cacaoCDS
CDS-auto458441auto458441Theobroma cacaoCDS
CDS-auto458442auto458442Theobroma cacaoCDS
CDS-auto458443auto458443Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t017520.1 ID=Tc09v2_t017520.1|Name=Tc09v2_t017520.1|organism=Theobroma cacao|type=mRNA|length=531bp
ATGATGATAGGAGGAGGAAGATCTTCGTCGTCTTCAACAACAGCAACAGC
GGCAGGTGGAACATGGGTTTCAACAACTTCCGTGTCCACTTCAGGGAAGA
GGATACAAAGGGAGATGTCTGAGCTCAACGTGGACCCTCCTCCCCATTGC
TCTGCCGGTCCCAAGGGTGACAACCTCTACCATTGGGTCGCCACCATCAT
TGGCCCTCCAGGAACACCATACCAAGGAGGCATATTTTTCCTTGACATAA
CATTTCCGAGTGATTATCCCTTTAAACCTCCCAAGGTAGTATTCAAAACT
CGAATATATCACTGCAATGTTGATGCTGCTGGCAATCTTAGTTTGGACAT
CTTAAAGGATAGTTGGAGCCCAGCCCTAACAGTTACGAAGGTGCTAACTG
CAATCAAATCAATTTTCACAAATCCAGACCCTTATAATCCACACGTCTCT
GGCATCGCTCGCTTGTACTTAACTGATAAGGCTAAACATGATGAAATAGC
TGCAGAGTGGACACTGCGTTTTGCCAAATAA
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protein sequence of Tc09v2_p017520.1

>Tc09v2_p017520.1 ID=Tc09v2_p017520.1|Name=Tc09v2_p017520.1|organism=Theobroma cacao|type=polypeptide|length=177bp
MMIGGGRSSSSSTTATAAGGTWVSTTSVSTSGKRIQREMSELNVDPPPHC
SAGPKGDNLYHWVATIIGPPGTPYQGGIFFLDITFPSDYPFKPPKVVFKT
RIYHCNVDAAGNLSLDILKDSWSPALTVTKVLTAIKSIFTNPDPYNPHVS
GIARLYLTDKAKHDEIAAEWTLRFAK*
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