Tc09v2_t017490.3

Overview
NameTc09v2_t017490.3
Unique NameTc09v2_t017490.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length603
Properties
Property NameValue
NoteTBP-associated factor 7 isoform 1
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Producttranscription initiation factor TFIID subunit 7, transcript variant X6
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589583
GenbankXM_018128437.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g017490Tc09v2_g017490Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p017490.3Tc09v2_p017490.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto458332auto458332Theobroma cacaoexon
exon-auto458333auto458333Theobroma cacaoexon
exon-auto458334auto458334Theobroma cacaoexon
exon-auto458335auto458335Theobroma cacaoexon
exon-auto458336auto458336Theobroma cacaoexon
exon-auto458337auto458337Theobroma cacaoexon
exon-auto458338auto458338Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto458339auto458339Theobroma cacaoCDS
CDS-auto458340auto458340Theobroma cacaoCDS
CDS-auto458341auto458341Theobroma cacaoCDS
CDS-auto458342auto458342Theobroma cacaoCDS
CDS-auto458343auto458343Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t017490.3 ID=Tc09v2_t017490.3|Name=Tc09v2_t017490.3|organism=Theobroma cacao|type=mRNA|length=603bp
ATGGAAGAGCAATTCATTCTTAGAGTTCCACCTTCTATTGCTGAGCGCAT
AGATCGCCTTTTAAGTGAAAATGCTTCATCTTCTGAGGACAAATCACTAG
ATTTGGTATTTTCTGAGGATGGGCGGACTGGGACATTTGTCATTGGCAAT
GATCGCTTCCCTGCCTCTCTCTTGGATCTTCCTTCTGTTGTTGAGTCATA
CAAAACTTATGATGATAGTGCGCTAGTTAAAACAGCTGATGTTGGCCAAA
TGATTATGGTCAGAGAGCCAGGAGATGCTTCTCCAGATGTGGTGGAGTAC
AGACATGGTCTCACTCCTCCGATGAGGGATGCACGGAAGCGAAGATTTCG
AAGGGAGCCAGATCTAAATCCAGAGCTTGTACAACGTGTTGAAAAGGATT
TGGTGAACATCATGTCTGGAGGAACAGTTGAAAGTCTTGATGCTGAAGGC
AATGGGCAAGGAGAAGCTGTTGATGAAGATGCACGCAATGCAAATAAGAA
AGCTCCAACTGCACCTGCTACAAAGCCTGAGGTTCCAGGTACAGGAGGCA
ATGCTGGGGAGGCCTACGGAAGTGACTCTGATGACTCTGACGATTCGATG
TGA
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protein sequence of Tc09v2_p017490.3

>Tc09v2_p017490.3 ID=Tc09v2_p017490.3|Name=Tc09v2_p017490.3|organism=Theobroma cacao|type=polypeptide|length=201bp
MEEQFILRVPPSIAERIDRLLSENASSSEDKSLDLVFSEDGRTGTFVIGN
DRFPASLLDLPSVVESYKTYDDSALVKTADVGQMIMVREPGDASPDVVEY
RHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLVNIMSGGTVESLDAEG
NGQGEAVDEDARNANKKAPTAPATKPEVPGTGGNAGEAYGSDSDDSDDSM
*
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