Tc09v2_t017490.2

Overview
NameTc09v2_t017490.2
Unique NameTc09v2_t017490.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length603
Properties
Property NameValue
NoteTBP-associated factor 7 isoform 1
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Producttranscription initiation factor TFIID subunit 7, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589583
GenbankXM_007014619.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g017490Tc09v2_g017490Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p017490.2Tc09v2_p017490.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto458318auto458318Theobroma cacaoexon
exon-auto458319auto458319Theobroma cacaoexon
exon-auto458320auto458320Theobroma cacaoexon
exon-auto458321auto458321Theobroma cacaoexon
exon-auto458322auto458322Theobroma cacaoexon
exon-auto458323auto458323Theobroma cacaoexon
exon-auto458324auto458324Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto458325auto458325Theobroma cacaoCDS
CDS-auto458326auto458326Theobroma cacaoCDS
CDS-auto458327auto458327Theobroma cacaoCDS
CDS-auto458328auto458328Theobroma cacaoCDS
CDS-auto458329auto458329Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t017490.2 ID=Tc09v2_t017490.2|Name=Tc09v2_t017490.2|organism=Theobroma cacao|type=mRNA|length=603bp
ATGGAAGAGCAATTCATTCTTAGAGTTCCACCTTCTATTGCTGAGCGCAT
AGATCGCCTTTTAAGTGAAAATGCTTCATCTTCTGAGGACAAATCACTAG
ATTTGGTATTTTCTGAGGATGGGCGGACTGGGACATTTGTCATTGGCAAT
GATCGCTTCCCTGCCTCTCTCTTGGATCTTCCTTCTGTTGTTGAGTCATA
CAAAACTTATGATGATAGTGCGCTAGTTAAAACAGCTGATGTTGGCCAAA
TGATTATGGTCAGAGAGCCAGGAGATGCTTCTCCAGATGTGGTGGAGTAC
AGACATGGTCTCACTCCTCCGATGAGGGATGCACGGAAGCGAAGATTTCG
AAGGGAGCCAGATCTAAATCCAGAGCTTGTACAACGTGTTGAAAAGGATT
TGGTGAACATCATGTCTGGAGGAACAGTTGAAAGTCTTGATGCTGAAGGC
AATGGGCAAGGAGAAGCTGTTGATGAAGATGCACGCAATGCAAATAAGAA
AGCTCCAACTGCACCTGCTACAAAGCCTGAGGTTCCAGGTACAGGAGGCA
ATGCTGGGGAGGCCTACGGAAGTGACTCTGATGACTCTGACGATTCGATG
TGA
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protein sequence of Tc09v2_p017490.2

>Tc09v2_p017490.2 ID=Tc09v2_p017490.2|Name=Tc09v2_p017490.2|organism=Theobroma cacao|type=polypeptide|length=201bp
MEEQFILRVPPSIAERIDRLLSENASSSEDKSLDLVFSEDGRTGTFVIGN
DRFPASLLDLPSVVESYKTYDDSALVKTADVGQMIMVREPGDASPDVVEY
RHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLVNIMSGGTVESLDAEG
NGQGEAVDEDARNANKKAPTAPATKPEVPGTGGNAGEAYGSDSDDSDDSM
*
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