Tc09v2_t017280.1

Overview
NameTc09v2_t017280.1
Unique NameTc09v2_t017280.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1662
Properties
Property NameValue
NoteL-ascorbate oxidase homolog
Model evidenceSupporting evidence includes similarity to: 66 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
ProductL-ascorbate oxidase homolog
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589565
GenbankXM_018128499.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g017280Tc09v2_g017280Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p017280.1Tc09v2_p017280.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto457989auto457989Theobroma cacaoexon
exon-auto457990auto457990Theobroma cacaoexon
exon-auto457991auto457991Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto457992auto457992Theobroma cacaoCDS
CDS-auto457993auto457993Theobroma cacaoCDS
CDS-auto457994auto457994Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t017280.1 ID=Tc09v2_t017280.1|Name=Tc09v2_t017280.1|organism=Theobroma cacao|type=mRNA|length=1662bp
ATGGGCGGGGTGATATTGATGCTTTTTTTGTGCTTCTCAGCTGGAGCATT
TATCTCTGAGGTCCGCGGTGAAGATCCGTACTTGTTCTTCACATGGAACG
TCACCTACGGCACCATCTCTCCATTGGGAGTTCCTCAGCAAGCCATTCTC
ATAAATGGTCAATTCCCAGGACCCAACATCAAGTCTACAACCAACAATAA
CATTGTTATCAATGTCTTCAATAACCTGGATGAGCCATTCCTTTTGACAT
GGAGCGGCATACAACACAGGAAAAACTCCTGGCAAGATGGAGTGCTTGGA
ACGAATTGTCCCATTCCCCCGGGGAAGAACTACACGTACCACTTCCAAGT
CAAGGACCAGATTGGGAGCTACATCTACTACCCCTCCACGGCTATGCACA
GGGCAGCTGGTGGTTTTGGTGGTCTTCGAGTAAACAGCCGTCTCCTCATC
CCTGTCCCTTATTCTGATCCCGAAGATGACTACACTGTCCTCATTGGCGA
TTGGTATACCAAGAGCCACACCATGCTCAAGAAGTTCTTGGACAGCGGTC
GTTCCTTGGGAAGGCCAGACGGTGTCCTCATCAATGGTAAAGTAGCCAAG
GGTAATGGCAAGGACAAGCCTCTCTTCACCATGAAGCCTGGCAAAACGTA
CAAATACAGGATCTGCAACGTTGGACTGAAGAACTCCCTCAACTTCAGGA
TCCAAGGACACAGGATGAAACTTGTGGAGATGGAGGGTTCCCACACCGTA
CAAAACGTGTACGAGTCCCTGGATGTGCATGTTGGGCAGTGCTTTGCGGT
CCTTGTTACTGCCGACCAAGGCCCTAAGGACTACTTTATGGTCGCATCCA
CCCGATTTACAAAGAACGTGCTCACTGCCACAGGCATCATTCGCTACACC
AATGGCAAGGGAGCAGCTGCCTCACCTAAGCTTCCTCCCGCCCCTGTTGG
TTGGGCTTGGTCCCTGAACCAGTTCCGCACCTTCCGTTGGAATCTCACGG
CCAGTGCTGCGAGGCCAAATCCTCAAGGCTCTTACCATTATGGTGCTATT
AACATCACGCGCACTATCAAGTTAGTCAACACTGCTAGCAGGGCCGGTGG
GAAGCTCCGGTACGGCATCAATGGCGTCTCCCATATCAACCCACCCACCC
CGCTGAAGCTTGCGGAGTATTATAATGTTGCCAACAAGGTCTTCAAGTAC
GACGTGATCGGGGACGAACCACCAGCTAAGATCACAGGTGTCACTGTGCA
ACCGAACGTCCTCAACATGACATTCCGTAACTTCGTGGAGATAATTTTGG
AGAACCACGAGAAAAGCATCCAGTCATATCACTTGGATGGATATTCATTC
TTTGCCGTCGCCATTGAGCCAGGCAGATGGACCCCCGAGAAAAGAAGGAA
CTACAATCTTCTAGACGCCGTTAGCAGGCACACCATCCAGGTTTTCCCCA
AGTCCTGGGCTGCCATCCTTCTGACGTTCGACAACGCTGGCATGTGGAAC
ATCAGGTCTGAGATTTGGGAGAGGACATACCTGGGCCAACAGCTCTACGC
CAGTGTCGCGTCCCCGGTGCGCTCCCTCAGGGACGAGTACAACATCCCTG
ACAATGCCCCGCTCTGTGGCGTGGTCACGAACTTGCCCAAGCCTCCGCCT
TACACTATCTGA
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protein sequence of Tc09v2_p017280.1

>Tc09v2_p017280.1 ID=Tc09v2_p017280.1|Name=Tc09v2_p017280.1|organism=Theobroma cacao|type=polypeptide|length=554bp
MGGVILMLFLCFSAGAFISEVRGEDPYLFFTWNVTYGTISPLGVPQQAIL
INGQFPGPNIKSTTNNNIVINVFNNLDEPFLLTWSGIQHRKNSWQDGVLG
TNCPIPPGKNYTYHFQVKDQIGSYIYYPSTAMHRAAGGFGGLRVNSRLLI
PVPYSDPEDDYTVLIGDWYTKSHTMLKKFLDSGRSLGRPDGVLINGKVAK
GNGKDKPLFTMKPGKTYKYRICNVGLKNSLNFRIQGHRMKLVEMEGSHTV
QNVYESLDVHVGQCFAVLVTADQGPKDYFMVASTRFTKNVLTATGIIRYT
NGKGAAASPKLPPAPVGWAWSLNQFRTFRWNLTASAARPNPQGSYHYGAI
NITRTIKLVNTASRAGGKLRYGINGVSHINPPTPLKLAEYYNVANKVFKY
DVIGDEPPAKITGVTVQPNVLNMTFRNFVEIILENHEKSIQSYHLDGYSF
FAVAIEPGRWTPEKRRNYNLLDAVSRHTIQVFPKSWAAILLTFDNAGMWN
IRSEIWERTYLGQQLYASVASPVRSLRDEYNIPDNAPLCGVVTNLPKPPP
YTI*
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