Tc09v2_t017180.1

Overview
NameTc09v2_t017180.1
Unique NameTc09v2_t017180.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1824
Properties
Property NameValue
NoteChaperonin 60 subunit beta 2, chloroplastic
Model evidenceSupporting evidence includes similarity to: 56 ESTs, 28 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productchaperonin 60 subunit beta 2, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589532
GenbankXM_018127969.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g017180Tc09v2_g017180Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p017180.1Tc09v2_p017180.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto457704auto457704Theobroma cacaoexon
exon-auto457705auto457705Theobroma cacaoexon
exon-auto457706auto457706Theobroma cacaoexon
exon-auto457707auto457707Theobroma cacaoexon
exon-auto457708auto457708Theobroma cacaoexon
exon-auto457709auto457709Theobroma cacaoexon
exon-auto457710auto457710Theobroma cacaoexon
exon-auto457711auto457711Theobroma cacaoexon
exon-auto457712auto457712Theobroma cacaoexon
exon-auto457713auto457713Theobroma cacaoexon
exon-auto457714auto457714Theobroma cacaoexon
exon-auto457715auto457715Theobroma cacaoexon
exon-auto457716auto457716Theobroma cacaoexon
exon-auto457717auto457717Theobroma cacaoexon
exon-auto457718auto457718Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto457719auto457719Theobroma cacaoCDS
CDS-auto457720auto457720Theobroma cacaoCDS
CDS-auto457721auto457721Theobroma cacaoCDS
CDS-auto457722auto457722Theobroma cacaoCDS
CDS-auto457723auto457723Theobroma cacaoCDS
CDS-auto457724auto457724Theobroma cacaoCDS
CDS-auto457725auto457725Theobroma cacaoCDS
CDS-auto457726auto457726Theobroma cacaoCDS
CDS-auto457727auto457727Theobroma cacaoCDS
CDS-auto457728auto457728Theobroma cacaoCDS
CDS-auto457729auto457729Theobroma cacaoCDS
CDS-auto457730auto457730Theobroma cacaoCDS
CDS-auto457731auto457731Theobroma cacaoCDS
CDS-auto457732auto457732Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t017180.1 ID=Tc09v2_t017180.1|Name=Tc09v2_t017180.1|organism=Theobroma cacao|type=mRNA|length=1824bp
ATGGCCTCCACTTTCACAGCCATGTCTTCAGTTGGTTCATTTGTTGCTCC
TAATGGTCGTGTCATGGATAAGAAACTTGCATCTTCTTCAAACAGATTGT
CATCTTTTGCTTCCATTTCATCAACTGCTTTTGGTATGAGACAGAATGTT
GTTCTTAGGAGAACACGACTGCCCAAGATTTCTGCAGCGAAAGAGCTACA
TTTCAACAAGGATGGCTCAGCTATAAAGAAATTGCAAACCGGTGTAAACA
AACTTGCTGATCTGGTTGGGGTCACTCTTGGACCAAAAGGCAGAAATGTT
GTTCTAGAAAGCAAATATGGCTCCCCGAAAATTGTTAATGATGGTGTGAC
AGTGGCCAAGGAGGTTGAGTTGGAGGATCCAGTTGAGAACATTGGTGCTA
AGCTAGTAAGACAGGCAGCTGCTAAGACAAATGACCTGGCTGGTGATGGA
ACGACAACATCAGTTGTTCTCGCGCAAGGTCTGATTGCTGAAGGGGTCAA
GGTCGTGGCGGCTGGTGCAAACCCAGTCTTAATCACCAGAGGCATTGAGA
AGACCTCAAAGGCTTTAGTATCTGAGCTTAAGGCTATTTCAAAAGAGGTT
GAAGACAGTGAACTTGCAGATGTGGCAGCTGTTAGTGCTGGGAACAACTA
TGAAGTAGGGAATATGATTGCTGAGGCCATGAGTAAAGTGGGTCGAAAGG
GTGTGGTTACCCTTGAGGAGGGGAAAAGTGCTGAAAATAGTCTTTATGTT
GTTGAAGGAATGCAATTTGATCGGGGTTATATTTCACCTTATTTTGTGAC
TGATGGTGAGAAAATGGCAGTAGAATATGAGAACTGCAAGTTGCTACTTG
TTGATAAGAAAATAACAAATGCAAGAGATCTTATCAACATCCTGGAAGAT
GCTATTAAAAGTGGGCACCCAATTTTGATAATTGCAGAAGATATTGAACA
GGAAGCCTTAGCAACGCTGGTTGTGAACAAGCTTAGAGGGGCTCTGAAGA
TTGCTGCGCTCAAAGCTCCTGGCTTTGGAGAGCGCAAGAGCCAGTACCTT
GATGACATCGCTATTCTTACTGGTGGTACTGTTATCAGAGATGAGGTTGG
GCTTTCCTTGGACAAAGCTGGCAGTGAGGTCCTCGGCCATGCTTCGAAGG
TGGTGCTTACCAAGGATACAACAACCATTGTGGGTGATGGAAGCACCCAG
GGAGCTGTAAACAAACGAGTTGCACAGATCAGAAATCTTATTGAGGCTGC
AGAACAAGACTATGAGAAGGAAAAACTTAATGAAAGGATTGCCAAATTGT
CTGGTGGTGTAGCTGTGATACAGGTTGGAGCTCAAACTGAAACAGAGCTT
AAAGAAAAGAAATTGAGAGTAGAGGATGCTCTTAATGCAACTAAGGCAGC
AGTTGAGGAAGGTATTGTTGTTGGTGGTGGATGTACTTTGCTAAGACTTG
CTTCTAAGGTGGATTCTATTAAGGATTCCCTTGATAATGATGAAGAAAAG
GTTGGAGCAGATATTGTCAAACGAGCCTTGAGTTACCCTCTAAAACTGAT
TGCTAAGAATGCTGGTGTTAATGGAAGTGTGGTGAGCGAGAAGGTGCTCT
CCAGTGATAACCCTAAGTATGGATACAATGCTGCCACTGGAAAATATGAG
GATCTTATGGCTGCAGGAATTATCGATCCAACCAAGGTGGTCAGATGTTG
CTTGGAGCATGCATCCTCAGTGGCTAAGACATTCTTGATGTCCGATTGTG
TGGTTGTCGAGATAAAGGAACCTGAGCCTGTGCCTGCTGGCAATCCCATG
GATAATTCAGGATATGGCTACTAA
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protein sequence of Tc09v2_p017180.1

>Tc09v2_p017180.1 ID=Tc09v2_p017180.1|Name=Tc09v2_p017180.1|organism=Theobroma cacao|type=polypeptide|length=608bp
MASTFTAMSSVGSFVAPNGRVMDKKLASSSNRLSSFASISSTAFGMRQNV
VLRRTRLPKISAAKELHFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNV
VLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDG
TTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKAISKEV
EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENSLYV
VEGMQFDRGYISPYFVTDGEKMAVEYENCKLLLVDKKITNARDLINILED
AIKSGHPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYL
DDIAILTGGTVIRDEVGLSLDKAGSEVLGHASKVVLTKDTTTIVGDGSTQ
GAVNKRVAQIRNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETEL
KEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDSIKDSLDNDEEK
VGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPKYGYNAATGKYE
DLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPVPAGNPM
DNSGYGY*
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