Tc09v2_t016310.4

Overview
NameTc09v2_t016310.4
Unique NameTc09v2_t016310.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2973
Properties
Property NameValue
NoteDExH-box ATP-dependent RNA helicase DExH10
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
ProductDExH-box ATP-dependent RNA helicase DExH10, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589487
GenbankXM_018127643.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g016310Tc09v2_g016310Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p016310.4Tc09v2_p016310.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto456035auto456035Theobroma cacaoexon
exon-auto456036auto456036Theobroma cacaoexon
exon-auto456037auto456037Theobroma cacaoexon
exon-auto456038auto456038Theobroma cacaoexon
exon-auto456039auto456039Theobroma cacaoexon
exon-auto456040auto456040Theobroma cacaoexon
exon-auto456041auto456041Theobroma cacaoexon
exon-auto456042auto456042Theobroma cacaoexon
exon-auto456043auto456043Theobroma cacaoexon
exon-auto456044auto456044Theobroma cacaoexon
exon-auto456045auto456045Theobroma cacaoexon
exon-auto456046auto456046Theobroma cacaoexon
exon-auto456047auto456047Theobroma cacaoexon
exon-auto456048auto456048Theobroma cacaoexon
exon-auto456049auto456049Theobroma cacaoexon
exon-auto456050auto456050Theobroma cacaoexon
exon-auto456051auto456051Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto456052auto456052Theobroma cacaoCDS
CDS-auto456053auto456053Theobroma cacaoCDS
CDS-auto456054auto456054Theobroma cacaoCDS
CDS-auto456055auto456055Theobroma cacaoCDS
CDS-auto456056auto456056Theobroma cacaoCDS
CDS-auto456057auto456057Theobroma cacaoCDS
CDS-auto456058auto456058Theobroma cacaoCDS
CDS-auto456059auto456059Theobroma cacaoCDS
CDS-auto456060auto456060Theobroma cacaoCDS
CDS-auto456061auto456061Theobroma cacaoCDS
CDS-auto456062auto456062Theobroma cacaoCDS
CDS-auto456063auto456063Theobroma cacaoCDS
CDS-auto456064auto456064Theobroma cacaoCDS
CDS-auto456065auto456065Theobroma cacaoCDS
CDS-auto456066auto456066Theobroma cacaoCDS
CDS-auto456067auto456067Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t016310.4 ID=Tc09v2_t016310.4|Name=Tc09v2_t016310.4|organism=Theobroma cacao|type=mRNA|length=2973bp
ATGGAAGAAGAACCGGCTGCACTAGGGAAACGGAAATCACCTGAAAAACC
ACATGTTACAGAGACCCCTAGCCAAGAATCAGCCTCCAAACGGAGAAGTC
TAGCACGAACATGCGTGCATGAGGTTGCAGTTCCTAGTGGGTACACTTCA
ATTAAAGATGAATCGATTCATGGGACGCTCTCAAATCCGGTGTACAATGG
GGACATGGCCAAAACTTATAAGTTTGAGCTTGACCCGTTTCAGCGAGTAT
CCGTGGCCTGCTTGGAAAGAAATGAGTCGGTTTTGGTCTCAGCACATACG
TCTGCAGGTAAAACTGCAGTTGCTGAGTACGCCATTGCAATGGCCTTTAG
GGATAAGCAAAGGGTCATATATACTTCACCATTGAAAGCTTTGAGTAACC
AGAAGTATAGGGAGCTGCATCATGAGTTCCAAGATGTGGGGCTGATGACT
GGTGATGTTACCTTGTCTCCTAATGCTAGTTGTCTGGTCATGACAACAGA
GATTCTTAGAGGGATGCTTTATAGGGGATCAGAGGTTTTGAAGGAGGTTG
CGTGGGTTATCTTTGATGAAATTCATTATATGAAGGATAGGGAAAGAGGG
GTTGTTTGGGAAGAGAGTATAATATTTTTGCCACCAGCTATAAAAATGGT
TTTCCTTTCGGCGACAATGTCCAATGCCACTGAGTTTGCGGAGTGGATTT
GTCATCTACACAAACAGCCTTGTCATGTGGTGTACACAGATTTCAGGCCA
ACTCCTTTGCAGCATTATGTTTTCCCCATGGGTGGGAGTGGATTATATCT
TGTGGTTGATGAGAATGAGCAATTAAGGGAGGACAATTTCATGAAGCTCC
AGGATTCATTCATAAAACAGAGACCGGGTGATTTGAACAAGAGTGCAAAT
GGAAAAAGTAGTGGGAGAAGTGCCAAAGGTGGGAGTGCTTCAGGGGGCTC
TGACATATACAAAATTGTGAAGATGATTATGGAACGGAAATTTCATCCAG
TCATTGTTTTTAGCTTCAGTAGAAGAGAGTGTGAATATCATGCGATGTCT
ATGTCCAAGCTTGACTTCAATACACAGGAGGAGAAGGATGATGTAGAACA
GGTTTTTCGCAATGCAGTACTCTGCTTGAATGAAGAAGATAGATGTTTGC
CTGCTATTGAATTAATGTTACCCTTGCTTGTGAGAGGCATTGCTGTACAT
CATTCTGGTTTGCTTCCTGTTATCAAGGAATTGGTGGAGCTTCTTTTCCA
GGAAGGCCTTATAAAGGCACTTTTTGCCACAGAAACATTTGCGATGGGTT
TAAACATGCCTGCAAAAACTGTTGTATTCACTTCTGTTAAGAAGTGGGAT
GGTGATAGCCATCGTTATATCGGATCTGGTGAGTATATCCAGATGAGCGG
AAGGGCTGGGCGTCGTGGCAAAGATGAACGTGGTATTTGTATCATTATGA
TTGATGAGCAGATGGAGATGAATACACTCAAGGACATGGTATTGGGTAAG
CCGGCACCTTTAGTCAGTACTTTCAGACTGAGTTACTATTCAATTTTGAA
TTTAATGAGCCGTGCGGAAGGCCAGATCACTGCTGAGCATGTGATAAGGA
ACTCATTCCACCAGTTTCAATATGAGAAGGCCTTACCTGATATAGGAAAG
AAGGTTTCAAAGCTGGAACAGGAAGCTGCCTTGCTTGATGCTTCAGGAGA
GGCTGAAGTAGCTGAATATCATAAACTAAAACTTGAAATAGCCCAGTTAG
AGAAGAAGTTGATGTCAGAAATTACTAGGCCTGAAAGAATTCTTTATTAT
CTTGATCCTGGACGGCTGATCACAGTAAGAGAAGGCAGTACAGATTGGGG
CTGGGGAGTTGTAGTTAATGTTGTTAAAAGGCCCTCTGCAGGTTTAGGTG
CGTTGCCTGCTCGTGGTGGTGGTTATATCGTGGATACACTACTTCATTGT
TCACCTGGTTCTAGTGAGAATGGTGCACGGCCAAAACCATGCCCACCCTG
TCCTGCAGAGAAGGGTGAAATGCATGTGGTTCCTGTTCAGTTGCCCCTTG
TTTCTGCTCTGAGCAAAATCAGAATATTCATACCTCCTGATCTTCGGCCA
CCTGAAGCCAGGCAGAGTATATTACTGGCAGTGCAGGAGCTAGGAACACG
ATTTCCTCAAGGCCTTCCAAAACTTAATCCTGTCACGGACATGAAAATTG
AAGATCCAGAAATTGTTGAGTTGGTGAAACAAGTTGAGGAACTCGAAAAG
AAGTTGTTTGCTCATCCACTTCACAAGTCTCAAGATGTGCATCAAATTAG
ATCTTTCCAGAGAAAGGCAGAGGTGAATCATGAGATTCAACAACTCAAGT
CAAAAATGCGTGATTCCCAGCTTAAAAAATTCCGCGATGAACTTAGGAAC
CGTTCAAGGGTACTGAAGAAGCTAGGCCATATTGATGCTGATGGTGTTGT
CCAGTTAAAGGGACGGGCAGCCTGCTTGATAGACACTGGAGATGAACTGC
TTGTTACAGAACTGATGTTTAATGGTACCTTCAATGATCTTGATCATCAC
CAAGTAGCTGCCCTTGCAAGTTGTTTCATTCCAGTAGACAAATCAAGTGA
ACAAATACAGTTGAGGACAGAAATTGCTAAACCGTTACAGCAACTCCAAG
AAAGTGCGAGAAAAATAGCAGAGATACAACATGAATGCAAATTGGATGTA
AATGTTGACGAGTATGTAGAATCAACAGTAAGGCCATTCTTGATGGATGT
GATTTATTGTTGGTCAAAGGGTGCAACTTTTGCAGAGATAACACAGATGA
CTGATATATTTGAAGGTAGCATTATTAGGAGCGCTAGAAGGCTTGATGAG
TTTCTGAACCAGCTGCATGCTGCTGCTGAAGCCGTCGGAGAAGTTAATTT
GGAGAAGAAATTTGCTGCAGCAAGTGAGAGCCTACGGCGAGGCATCATGT
TTGCAAACTCCCTTTATCTGTAA
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protein sequence of Tc09v2_p016310.4

>Tc09v2_p016310.4 ID=Tc09v2_p016310.4|Name=Tc09v2_p016310.4|organism=Theobroma cacao|type=polypeptide|length=991bp
MEEEPAALGKRKSPEKPHVTETPSQESASKRRSLARTCVHEVAVPSGYTS
IKDESIHGTLSNPVYNGDMAKTYKFELDPFQRVSVACLERNESVLVSAHT
SAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHHEFQDVGLMT
GDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG
VVWEESIIFLPPAIKMVFLSATMSNATEFAEWICHLHKQPCHVVYTDFRP
TPLQHYVFPMGGSGLYLVVDENEQLREDNFMKLQDSFIKQRPGDLNKSAN
GKSSGRSAKGGSASGGSDIYKIVKMIMERKFHPVIVFSFSRRECEYHAMS
MSKLDFNTQEEKDDVEQVFRNAVLCLNEEDRCLPAIELMLPLLVRGIAVH
HSGLLPVIKELVELLFQEGLIKALFATETFAMGLNMPAKTVVFTSVKKWD
GDSHRYIGSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMNTLKDMVLGK
PAPLVSTFRLSYYSILNLMSRAEGQITAEHVIRNSFHQFQYEKALPDIGK
KVSKLEQEAALLDASGEAEVAEYHKLKLEIAQLEKKLMSEITRPERILYY
LDPGRLITVREGSTDWGWGVVVNVVKRPSAGLGALPARGGGYIVDTLLHC
SPGSSENGARPKPCPPCPAEKGEMHVVPVQLPLVSALSKIRIFIPPDLRP
PEARQSILLAVQELGTRFPQGLPKLNPVTDMKIEDPEIVELVKQVEELEK
KLFAHPLHKSQDVHQIRSFQRKAEVNHEIQQLKSKMRDSQLKKFRDELRN
RSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHH
QVAALASCFIPVDKSSEQIQLRTEIAKPLQQLQESARKIAEIQHECKLDV
NVDEYVESTVRPFLMDVIYCWSKGATFAEITQMTDIFEGSIIRSARRLDE
FLNQLHAAAEAVGEVNLEKKFAAASESLRRGIMFANSLYL*
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