Tc09v2_t016310.3

Overview
NameTc09v2_t016310.3
Unique NameTc09v2_t016310.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2973
Properties
Property NameValue
NoteDExH-box ATP-dependent RNA helicase DExH10
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
ProductDExH-box ATP-dependent RNA helicase DExH10, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589487
GenbankXM_018127642.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g016310Tc09v2_g016310Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p016310.3Tc09v2_p016310.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto456001auto456001Theobroma cacaoexon
exon-auto456002auto456002Theobroma cacaoexon
exon-auto456003auto456003Theobroma cacaoexon
exon-auto456004auto456004Theobroma cacaoexon
exon-auto456005auto456005Theobroma cacaoexon
exon-auto456006auto456006Theobroma cacaoexon
exon-auto456007auto456007Theobroma cacaoexon
exon-auto456008auto456008Theobroma cacaoexon
exon-auto456009auto456009Theobroma cacaoexon
exon-auto456010auto456010Theobroma cacaoexon
exon-auto456011auto456011Theobroma cacaoexon
exon-auto456012auto456012Theobroma cacaoexon
exon-auto456013auto456013Theobroma cacaoexon
exon-auto456014auto456014Theobroma cacaoexon
exon-auto456015auto456015Theobroma cacaoexon
exon-auto456016auto456016Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto456017auto456017Theobroma cacaoCDS
CDS-auto456018auto456018Theobroma cacaoCDS
CDS-auto456019auto456019Theobroma cacaoCDS
CDS-auto456020auto456020Theobroma cacaoCDS
CDS-auto456021auto456021Theobroma cacaoCDS
CDS-auto456022auto456022Theobroma cacaoCDS
CDS-auto456023auto456023Theobroma cacaoCDS
CDS-auto456024auto456024Theobroma cacaoCDS
CDS-auto456025auto456025Theobroma cacaoCDS
CDS-auto456026auto456026Theobroma cacaoCDS
CDS-auto456027auto456027Theobroma cacaoCDS
CDS-auto456028auto456028Theobroma cacaoCDS
CDS-auto456029auto456029Theobroma cacaoCDS
CDS-auto456030auto456030Theobroma cacaoCDS
CDS-auto456031auto456031Theobroma cacaoCDS
CDS-auto456032auto456032Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t016310.3 ID=Tc09v2_t016310.3|Name=Tc09v2_t016310.3|organism=Theobroma cacao|type=mRNA|length=2973bp
ATGGAAGAAGAACCGGCTGCACTAGGGAAACGGAAATCACCTGAAAAACC
ACATGTTACAGAGACCCCTAGCCAAGAATCAGCCTCCAAACGGAGAAGTC
TAGCACGAACATGCGTGCATGAGGTTGCAGTTCCTAGTGGGTACACTTCA
ATTAAAGATGAATCGATTCATGGGACGCTCTCAAATCCGGTGTACAATGG
GGACATGGCCAAAACTTATAAGTTTGAGCTTGACCCGTTTCAGCGAGTAT
CCGTGGCCTGCTTGGAAAGAAATGAGTCGGTTTTGGTCTCAGCACATACG
TCTGCAGGTAAAACTGCAGTTGCTGAGTACGCCATTGCAATGGCCTTTAG
GGATAAGCAAAGGGTCATATATACTTCACCATTGAAAGCTTTGAGTAACC
AGAAGTATAGGGAGCTGCATCATGAGTTCCAAGATGTGGGGCTGATGACT
GGTGATGTTACCTTGTCTCCTAATGCTAGTTGTCTGGTCATGACAACAGA
GATTCTTAGAGGGATGCTTTATAGGGGATCAGAGGTTTTGAAGGAGGTTG
CGTGGGTTATCTTTGATGAAATTCATTATATGAAGGATAGGGAAAGAGGG
GTTGTTTGGGAAGAGAGTATAATATTTTTGCCACCAGCTATAAAAATGGT
TTTCCTTTCGGCGACAATGTCCAATGCCACTGAGTTTGCGGAGTGGATTT
GTCATCTACACAAACAGCCTTGTCATGTGGTGTACACAGATTTCAGGCCA
ACTCCTTTGCAGCATTATGTTTTCCCCATGGGTGGGAGTGGATTATATCT
TGTGGTTGATGAGAATGAGCAATTAAGGGAGGACAATTTCATGAAGCTCC
AGGATTCATTCATAAAACAGAGACCGGGTGATTTGAACAAGAGTGCAAAT
GGAAAAAGTAGTGGGAGAAGTGCCAAAGGTGGGAGTGCTTCAGGGGGCTC
TGACATATACAAAATTGTGAAGATGATTATGGAACGGAAATTTCATCCAG
TCATTGTTTTTAGCTTCAGTAGAAGAGAGTGTGAATATCATGCGATGTCT
ATGTCCAAGCTTGACTTCAATACACAGGAGGAGAAGGATGATGTAGAACA
GGTTTTTCGCAATGCAGTACTCTGCTTGAATGAAGAAGATAGATGTTTGC
CTGCTATTGAATTAATGTTACCCTTGCTTGTGAGAGGCATTGCTGTACAT
CATTCTGGTTTGCTTCCTGTTATCAAGGAATTGGTGGAGCTTCTTTTCCA
GGAAGGCCTTATAAAGGCACTTTTTGCCACAGAAACATTTGCGATGGGTT
TAAACATGCCTGCAAAAACTGTTGTATTCACTTCTGTTAAGAAGTGGGAT
GGTGATAGCCATCGTTATATCGGATCTGGTGAGTATATCCAGATGAGCGG
AAGGGCTGGGCGTCGTGGCAAAGATGAACGTGGTATTTGTATCATTATGA
TTGATGAGCAGATGGAGATGAATACACTCAAGGACATGGTATTGGGTAAG
CCGGCACCTTTAGTCAGTACTTTCAGACTGAGTTACTATTCAATTTTGAA
TTTAATGAGCCGTGCGGAAGGCCAGATCACTGCTGAGCATGTGATAAGGA
ACTCATTCCACCAGTTTCAATATGAGAAGGCCTTACCTGATATAGGAAAG
AAGGTTTCAAAGCTGGAACAGGAAGCTGCCTTGCTTGATGCTTCAGGAGA
GGCTGAAGTAGCTGAATATCATAAACTAAAACTTGAAATAGCCCAGTTAG
AGAAGAAGTTGATGTCAGAAATTACTAGGCCTGAAAGAATTCTTTATTAT
CTTGATCCTGGACGGCTGATCACAGTAAGAGAAGGCAGTACAGATTGGGG
CTGGGGAGTTGTAGTTAATGTTGTTAAAAGGCCCTCTGCAGGTTTAGGTG
CGTTGCCTGCTCGTGGTGGTGGTTATATCGTGGATACACTACTTCATTGT
TCACCTGGTTCTAGTGAGAATGGTGCACGGCCAAAACCATGCCCACCCTG
TCCTGCAGAGAAGGGTGAAATGCATGTGGTTCCTGTTCAGTTGCCCCTTG
TTTCTGCTCTGAGCAAAATCAGAATATTCATACCTCCTGATCTTCGGCCA
CCTGAAGCCAGGCAGAGTATATTACTGGCAGTGCAGGAGCTAGGAACACG
ATTTCCTCAAGGCCTTCCAAAACTTAATCCTGTCACGGACATGAAAATTG
AAGATCCAGAAATTGTTGAGTTGGTGAAACAAGTTGAGGAACTCGAAAAG
AAGTTGTTTGCTCATCCACTTCACAAGTCTCAAGATGTGCATCAAATTAG
ATCTTTCCAGAGAAAGGCAGAGGTGAATCATGAGATTCAACAACTCAAGT
CAAAAATGCGTGATTCCCAGCTTAAAAAATTCCGCGATGAACTTAGGAAC
CGTTCAAGGGTACTGAAGAAGCTAGGCCATATTGATGCTGATGGTGTTGT
CCAGTTAAAGGGACGGGCAGCCTGCTTGATAGACACTGGAGATGAACTGC
TTGTTACAGAACTGATGTTTAATGGTACCTTCAATGATCTTGATCATCAC
CAAGTAGCTGCCCTTGCAAGTTGTTTCATTCCAGTAGACAAATCAAGTGA
ACAAATACAGTTGAGGACAGAAATTGCTAAACCGTTACAGCAACTCCAAG
AAAGTGCGAGAAAAATAGCAGAGATACAACATGAATGCAAATTGGATGTA
AATGTTGACGAGTATGTAGAATCAACAGTAAGGCCATTCTTGATGGATGT
GATTTATTGTTGGTCAAAGGGTGCAACTTTTGCAGAGATAACACAGATGA
CTGATATATTTGAAGGTAGCATTATTAGGAGCGCTAGAAGGCTTGATGAG
TTTCTGAACCAGCTGCATGCTGCTGCTGAAGCCGTCGGAGAAGTTAATTT
GGAGAAGAAATTTGCTGCAGCAAGTGAGAGCCTACGGCGAGGCATCATGT
TTGCAAACTCCCTTTATCTGTAA
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protein sequence of Tc09v2_p016310.3

>Tc09v2_p016310.3 ID=Tc09v2_p016310.3|Name=Tc09v2_p016310.3|organism=Theobroma cacao|type=polypeptide|length=991bp
MEEEPAALGKRKSPEKPHVTETPSQESASKRRSLARTCVHEVAVPSGYTS
IKDESIHGTLSNPVYNGDMAKTYKFELDPFQRVSVACLERNESVLVSAHT
SAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHHEFQDVGLMT
GDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG
VVWEESIIFLPPAIKMVFLSATMSNATEFAEWICHLHKQPCHVVYTDFRP
TPLQHYVFPMGGSGLYLVVDENEQLREDNFMKLQDSFIKQRPGDLNKSAN
GKSSGRSAKGGSASGGSDIYKIVKMIMERKFHPVIVFSFSRRECEYHAMS
MSKLDFNTQEEKDDVEQVFRNAVLCLNEEDRCLPAIELMLPLLVRGIAVH
HSGLLPVIKELVELLFQEGLIKALFATETFAMGLNMPAKTVVFTSVKKWD
GDSHRYIGSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMNTLKDMVLGK
PAPLVSTFRLSYYSILNLMSRAEGQITAEHVIRNSFHQFQYEKALPDIGK
KVSKLEQEAALLDASGEAEVAEYHKLKLEIAQLEKKLMSEITRPERILYY
LDPGRLITVREGSTDWGWGVVVNVVKRPSAGLGALPARGGGYIVDTLLHC
SPGSSENGARPKPCPPCPAEKGEMHVVPVQLPLVSALSKIRIFIPPDLRP
PEARQSILLAVQELGTRFPQGLPKLNPVTDMKIEDPEIVELVKQVEELEK
KLFAHPLHKSQDVHQIRSFQRKAEVNHEIQQLKSKMRDSQLKKFRDELRN
RSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHH
QVAALASCFIPVDKSSEQIQLRTEIAKPLQQLQESARKIAEIQHECKLDV
NVDEYVESTVRPFLMDVIYCWSKGATFAEITQMTDIFEGSIIRSARRLDE
FLNQLHAAAEAVGEVNLEKKFAAASESLRRGIMFANSLYL*
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