Tc09v2_t014030.1

Overview
NameTc09v2_t014030.1
Unique NameTc09v2_t014030.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1611
Properties
Property NameValue
NoteCysteine--tRNA ligase 2, cytoplasmic
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productcysteine--tRNA ligase 2, cytoplasmic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589184
GenbankXM_007014045.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g014030Tc09v2_g014030Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p014030.1Tc09v2_p014030.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto451392auto451392Theobroma cacaoexon
exon-auto451393auto451393Theobroma cacaoexon
exon-auto451394auto451394Theobroma cacaoexon
exon-auto451395auto451395Theobroma cacaoexon
exon-auto451396auto451396Theobroma cacaoexon
exon-auto451397auto451397Theobroma cacaoexon
exon-auto451398auto451398Theobroma cacaoexon
exon-auto451399auto451399Theobroma cacaoexon
exon-auto451400auto451400Theobroma cacaoexon
exon-auto451401auto451401Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto451402auto451402Theobroma cacaoCDS
CDS-auto451403auto451403Theobroma cacaoCDS
CDS-auto451404auto451404Theobroma cacaoCDS
CDS-auto451405auto451405Theobroma cacaoCDS
CDS-auto451406auto451406Theobroma cacaoCDS
CDS-auto451407auto451407Theobroma cacaoCDS
CDS-auto451408auto451408Theobroma cacaoCDS
CDS-auto451409auto451409Theobroma cacaoCDS
CDS-auto451410auto451410Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t014030.1 ID=Tc09v2_t014030.1|Name=Tc09v2_t014030.1|organism=Theobroma cacao|type=mRNA|length=1611bp
ATGGATTCCTCAAAGCGAGAAACAAACCTGAAAAAAGCCCCCAAAACAAT
GACGAAGAAGGAAACCGAAGAGTTCCAATTCGTCGTTTACAGTACCATGA
CTCAGCAGAAAGAGGTCTTCAAGCCCAAAATCCCCGGAAAAGTTGGCATG
TATGTCTGTGGTGTCACCGCCTATGATTTCAGCCACCTTGGTCATGCTCG
TGCTGCGGTTGCCTTTGATGTCCTTTACAGGTACTTACAACACTTGGGCT
ATGAGGTTACTTATGTGCGGAATTTTACTGATGTCGATGATAAGATAATT
CGTCGGGCAAATGAGACTGGAGAAGATCCATTAAGTTTGAGTGACCGATA
CTGTAAAGAATATAATGTAGATATGGCTGATCTACAGTGCCTTTCTCCAA
CACATGAGCCACGTGTGTCTGATCACCTTGAGCAGATCAAAGATATGATA
ACTCAGATTATAAACAAAGACTTTGGATATGTGGTTGATGGGGATGTGTT
TTTTGCTGTTGATAAATTCCCAAATTATGGCAAGTTATCCGGGCAGAAGC
TGGAAAACAATAGAGCTGGTGAACGTGTTGCTGTTGACTCAAGGAAGCGT
AATCCTTCTGACTTTGCATTATGGAAGGCTGCAAAGCCAGGTGAGCCATC
TTGGGACAGCCCATGGGGACATGGACGACCTGGGTGGCACATAGAATGCA
GCGCAATGAGTGCACATTATTTAAGTTTCAAATTTGACATTCATGGTGGT
GGGCTTGATTTGATTTTCCCACACCATGAAAATGAGATTGCTCAGAGTTG
TGCTGCATGCCAGGAGAGTGACGTGAGTTATTGGATGCACAATGGACATG
TTACTAATAACAATGAGAAGATGTCAAAATCTTTAGGTAACTTTTTCACA
ATCCGCCAGATTACTGAGAGATATCATCCACTGGCTTTGAGATACTTCTT
GATAAGTGCCCACTACCGTTCTCCTCTCAATTACTCTGTTGTGCAGCTGG
AAGGTGCATCTGAAGCTGTATTTTATATATATCAGACTTTGAAAGATTGT
CAAGATGCATTATTACAACTGCAAGAAGAAAGGCCTAAGGATGGCAAACC
AGCTCGGACTACTCCAGATGCCCAGGAATGTATTAGCAAGCTATGCAGTG
AATTCCAGGCAAAAATGTCAGATGACTTGAGCACTTCACTTATACTGACT
GGGGCCTTTCTAGAAGCACTGAAGTTAATAAACAATTTGTTGACCATGCT
AAAGAAGAAGCAACAAAAGCAACAAAGATTATCTGTAATTCAATCCCTTA
CAGAAGTTGAAAAAGAAGTTAAGAAAGTTTTAGATGTTCTTGGATTGCAG
CCACCTTGCTCTTATGCTGAGGTTTTGCTGCAATTGAGGGACAGGGCATT
AACAAGAGCAGGGTTGGTGGAAGATGATGTGTTGCGTCTAATTAGTGAAA
GGGTAGAAGTGAGGAGAAACAAAGATTTCTTAAAAAGTGATCAGATGAGA
GCTGATTTGCAAGCAAAGGGCATTGCACTTATGGATGTCGGCACAGAGAC
AATTTGGAGACCTTGTGTTCCTGTTCAACAAGAACTGGAAGTAGTGCCAC
CAGGAGGTTAG
back to top

protein sequence of Tc09v2_p014030.1

>Tc09v2_p014030.1 ID=Tc09v2_p014030.1|Name=Tc09v2_p014030.1|organism=Theobroma cacao|type=polypeptide|length=537bp
MDSSKRETNLKKAPKTMTKKETEEFQFVVYSTMTQQKEVFKPKIPGKVGM
YVCGVTAYDFSHLGHARAAVAFDVLYRYLQHLGYEVTYVRNFTDVDDKII
RRANETGEDPLSLSDRYCKEYNVDMADLQCLSPTHEPRVSDHLEQIKDMI
TQIINKDFGYVVDGDVFFAVDKFPNYGKLSGQKLENNRAGERVAVDSRKR
NPSDFALWKAAKPGEPSWDSPWGHGRPGWHIECSAMSAHYLSFKFDIHGG
GLDLIFPHHENEIAQSCAACQESDVSYWMHNGHVTNNNEKMSKSLGNFFT
IRQITERYHPLALRYFLISAHYRSPLNYSVVQLEGASEAVFYIYQTLKDC
QDALLQLQEERPKDGKPARTTPDAQECISKLCSEFQAKMSDDLSTSLILT
GAFLEALKLINNLLTMLKKKQQKQQRLSVIQSLTEVEKEVKKVLDVLGLQ
PPCSYAEVLLQLRDRALTRAGLVEDDVLRLISERVEVRRNKDFLKSDQMR
ADLQAKGIALMDVGTETIWRPCVPVQQELEVVPPGG*
back to top