Tc09v2_t013240.3

Overview
NameTc09v2_t013240.3
Unique NameTc09v2_t013240.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1470
Properties
Property NameValue
NoteHistone-lysine N-methyltransferase ASHR3
Model evidenceSupporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Producthistone-lysine N-methyltransferase ASHR3, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589036
GenbankXM_007013842.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g013240Tc09v2_g013240Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p013240.3Tc09v2_p013240.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto449944auto449944Theobroma cacaoexon
exon-auto449945auto449945Theobroma cacaoexon
exon-auto449946auto449946Theobroma cacaoexon
exon-auto449947auto449947Theobroma cacaoexon
exon-auto449948auto449948Theobroma cacaoexon
exon-auto449949auto449949Theobroma cacaoexon
exon-auto449950auto449950Theobroma cacaoexon
exon-auto449951auto449951Theobroma cacaoexon
exon-auto449952auto449952Theobroma cacaoexon
exon-auto449953auto449953Theobroma cacaoexon
exon-auto449954auto449954Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto449955auto449955Theobroma cacaoCDS
CDS-auto449956auto449956Theobroma cacaoCDS
CDS-auto449957auto449957Theobroma cacaoCDS
CDS-auto449958auto449958Theobroma cacaoCDS
CDS-auto449959auto449959Theobroma cacaoCDS
CDS-auto449960auto449960Theobroma cacaoCDS
CDS-auto449961auto449961Theobroma cacaoCDS
CDS-auto449962auto449962Theobroma cacaoCDS
CDS-auto449963auto449963Theobroma cacaoCDS
CDS-auto449964auto449964Theobroma cacaoCDS
CDS-auto449965auto449965Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t013240.3 ID=Tc09v2_t013240.3|Name=Tc09v2_t013240.3|organism=Theobroma cacao|type=mRNA|length=1470bp
ATGCCAGACCTTGGAAATCTTTCTCACTCTTCATCTCTATCTCTCTCTCG
TTGCCCTCACCTGAAACTTCTCTCCATTGACTCTGCCGATTCCGCCAATG
CTTTTGACCCTGGCGCCATCAAAACCCTAGCCTTAAACTGCGGTTGGGCC
CAGGGATTGGTCCGAAAAGGCGCTGACTGCAATGGGAATGGAATTAGGGG
TTTGAAGCGAGTGAAGAAGGGGTCTAATGGTAAGGTTTTGGGGGATTATT
TGAGGGATTGGGTTCAGAGTAAGATGGAATCTGGTATTCCTGAGTCCGGG
TGTGTTCTTCCATTTCTCGTTGGGGCTAAGAAATCGGTTGAATGTCTCCA
TTGCTATAAGCTCATCTATCCAGGGGAGGAGGTATTATGCTCAGTTCGTG
GTTGTCAAGGAGTTTATCACGAAATATGTGCCAAAGAAAGTTTTAGGATG
TCTAATCCAAAAAAGTTCCAGTGTCCACAGCATGTATGCTTCGTTTGCAG
ACAGAGAACACAATGGCGATGTGTATGTTGTTCAATGGCGTCTCATAATA
AGTGTGCCCCGTGGCCAGATGCAGTGACTCATTTGGAGGACAAACCGGGG
AGAGCAATTTGTTGGAGGCATCCAACTAATTGGCGGCTGGACAAGAAGCA
TGCAGTTCCAGCAACTGAAATAGAGGAAATTTTCTGTCAATTGCCTTTAC
CTTACAAGGATGAGGAGTTCAAGCTTGACTTGACATGGAGAGATTTAATG
GAGAATAAATTGGAGCCACCTCCATATGTCCACATCAAGCGCAATGTCTA
CCTAGTGAAGAAAAAGCGTGATGATGCTGATGATGATATTGGATGCACAA
GTTGTAGTTCCGATTGCTCCGAGGATTGTGTATGCAGAGTTCAATGCATA
AGCTGCTCAAAGGCTTGCCGCTGCCCTGAAACTTGCACCAACAGGCCATT
TCGCAAGGAGAAAAAGATCAGAATTGTCAAGACTGAACTTTGTGGTTGGG
GTGTAGAGGCCGCTGAACCTATTAATAAAGGAGATTTTGTAATTGAGTAT
ATTGGGGAAGTAATTGATGATGCTCAGTGCGAAAAGAGGCTTTGGGACAT
GAAGTACAAGGGGGTGAAGAACTTTTACATGTGTGAAATTCGGAAAGACT
TCACAATAGATGCAACTTTTAAAGGGAACACATCTCGTTTTTTAAACCAC
AGCTGTGATCCGAACTGTGTTTTGGAGAAGTGGCAAGTTGAAGGGGAAAC
ACGTGTGGGGGTGTTCGCTGCTCGATCAATTGAAGTTGGCGAGCCACTGA
CATATGACTACAGGTTTGTGCAATTTGGACCCGAAGTGAAGTGCTATTGT
GGTTCTTCAAATTGTCAAGGTTATCTTGGGACCAAAAGAAAGATTGTTAA
ATTGGATCTTTCCTGGGGCTCAAAACGCAGGAGATCTTCAGCTGCTTGCT
TAGCCATCATAACTGTATAA
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protein sequence of Tc09v2_p013240.3

>Tc09v2_p013240.3 ID=Tc09v2_p013240.3|Name=Tc09v2_p013240.3|organism=Theobroma cacao|type=polypeptide|length=490bp
MPDLGNLSHSSSLSLSRCPHLKLLSIDSADSANAFDPGAIKTLALNCGWA
QGLVRKGADCNGNGIRGLKRVKKGSNGKVLGDYLRDWVQSKMESGIPESG
CVLPFLVGAKKSVECLHCYKLIYPGEEVLCSVRGCQGVYHEICAKESFRM
SNPKKFQCPQHVCFVCRQRTQWRCVCCSMASHNKCAPWPDAVTHLEDKPG
RAICWRHPTNWRLDKKHAVPATEIEEIFCQLPLPYKDEEFKLDLTWRDLM
ENKLEPPPYVHIKRNVYLVKKKRDDADDDIGCTSCSSDCSEDCVCRVQCI
SCSKACRCPETCTNRPFRKEKKIRIVKTELCGWGVEAAEPINKGDFVIEY
IGEVIDDAQCEKRLWDMKYKGVKNFYMCEIRKDFTIDATFKGNTSRFLNH
SCDPNCVLEKWQVEGETRVGVFAARSIEVGEPLTYDYRFVQFGPEVKCYC
GSSNCQGYLGTKRKIVKLDLSWGSKRRRSSAACLAIITV*
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