Tc09v2_t013240.1

Overview
NameTc09v2_t013240.1
Unique NameTc09v2_t013240.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1245
Properties
Property NameValue
NoteHistone-lysine N-methyltransferase ASHR3
Model evidenceSupporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Producthistone-lysine N-methyltransferase ASHR3, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589036
GenbankXM_018127814.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g013240Tc09v2_g013240Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p013240.1Tc09v2_p013240.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto449900auto449900Theobroma cacaoexon
exon-auto449901auto449901Theobroma cacaoexon
exon-auto449902auto449902Theobroma cacaoexon
exon-auto449903auto449903Theobroma cacaoexon
exon-auto449904auto449904Theobroma cacaoexon
exon-auto449905auto449905Theobroma cacaoexon
exon-auto449906auto449906Theobroma cacaoexon
exon-auto449907auto449907Theobroma cacaoexon
exon-auto449908auto449908Theobroma cacaoexon
exon-auto449909auto449909Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto449910auto449910Theobroma cacaoCDS
CDS-auto449911auto449911Theobroma cacaoCDS
CDS-auto449912auto449912Theobroma cacaoCDS
CDS-auto449913auto449913Theobroma cacaoCDS
CDS-auto449914auto449914Theobroma cacaoCDS
CDS-auto449915auto449915Theobroma cacaoCDS
CDS-auto449916auto449916Theobroma cacaoCDS
CDS-auto449917auto449917Theobroma cacaoCDS
CDS-auto449918auto449918Theobroma cacaoCDS
CDS-auto449919auto449919Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t013240.1 ID=Tc09v2_t013240.1|Name=Tc09v2_t013240.1|organism=Theobroma cacao|type=mRNA|length=1245bp
ATGCCAGACCTTGGAAATCTTTCTCACTCTTCATCTCTATCTCTCTCTCG
TTGCCCTCACCTGAAACTTCTCTCCATTGACTCTGCCGATTCCGCCAATG
CTTTTGACCCTGGCGCCATCAAAACCCTAGCCTTAAACTGCGGTTGGGCC
CAGGGATTGGTCCGAAAAGGCGCTGACTGCAATGGGAATGGAATTAGGGG
TTTGAAGCGAGTGAAGAAGGGGTCTAATGGTAAGGTTTTGGGGGATTATT
TGAGGGATTGGGTTCAGAGTAAGATGGAATCTGGTATTCCTGAGTCCGGG
TGTGTTCTTCCATTTCTCGTTGGGGCTAAGAAATCGGTTGAATGTCTCCA
TTGCTATAAGCTCATCTATCCAGGGGAGGAGGTATTATGCTCAGTTCGTG
GTTGTCAAGGAGTTTATCACGAAATATGTGCCAAAGAAAGTTTTAGGATG
TCTAATCCAAAAAAGTTCCAGTGTCCACAGCATGTATGCTTCGTTTGCAG
ACAGAGAACACAATGGCGATGTGTATGTTGTTCAATGGCGTCTCATAATA
AGTGTGCCCCGTGGCCAGATGCAGTGACTCATTTGGAGGACAAACCGGGG
AGAGCAATTTGTTGGAGGCATCCAACTAATTGGCGGCTGGACAAGAAGCA
TGCAGTTCCAGCAACTGAAATAGAGGAAATTTTCTGTCAATTGCCTTTAC
CTTACAAGGATGAGGAGTTCAAGCTTGACTTGACATGGAGAGATTTAATG
GAGAATAAATTGGAGCCACCTCCATATGTCCACATCAAGCGCAATGTCTA
CCTAGTGAAGAAAAAGCGTGATGATGCTGATGATGATATTGGATGCACAA
GTTGTAGTTCCGATTGCTCCGAGGATTGTGTATGCAGAGTTCAATGCATA
AGCTGCTCAAAGGCTTGCCGCTGCCCTGAAACTTGCACCAACAGGCCATT
TCGCAAGGAGAAAAAGATCAGAATTGTCAAGACTGAACTTTGTGGTTGGG
GTGTAGAGGCCGCTGAACCTATTAATAAAGGAGATTTTGTAATTGAGTAT
ATTGGGGAAGTAATTGATGATGCTCAGTGCGAAAAGAGGCTTTGGGACAT
GAAGTACAAGGGGGTGAAGAACTTTTACATGTGTGAAATTCGGAAAGACT
TCACAATAGATGCAACTTTTAAAGGGAACACATCTCGTTTTTTAAACCAC
AGCTGTGATCCGAACTGTGTTTTGGAGAAGTGGTTGGCAAGTTGA
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protein sequence of Tc09v2_p013240.1

>Tc09v2_p013240.1 ID=Tc09v2_p013240.1|Name=Tc09v2_p013240.1|organism=Theobroma cacao|type=polypeptide|length=415bp
MPDLGNLSHSSSLSLSRCPHLKLLSIDSADSANAFDPGAIKTLALNCGWA
QGLVRKGADCNGNGIRGLKRVKKGSNGKVLGDYLRDWVQSKMESGIPESG
CVLPFLVGAKKSVECLHCYKLIYPGEEVLCSVRGCQGVYHEICAKESFRM
SNPKKFQCPQHVCFVCRQRTQWRCVCCSMASHNKCAPWPDAVTHLEDKPG
RAICWRHPTNWRLDKKHAVPATEIEEIFCQLPLPYKDEEFKLDLTWRDLM
ENKLEPPPYVHIKRNVYLVKKKRDDADDDIGCTSCSSDCSEDCVCRVQCI
SCSKACRCPETCTNRPFRKEKKIRIVKTELCGWGVEAAEPINKGDFVIEY
IGEVIDDAQCEKRLWDMKYKGVKNFYMCEIRKDFTIDATFKGNTSRFLNH
SCDPNCVLEKWLAS*
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