Tc09v2_t013220.1

Overview
NameTc09v2_t013220.1
Unique NameTc09v2_t013220.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1077
Properties
Property NameValue
NoteHeptahelical transmembrane protein 2
Model evidenceSupporting evidence includes similarity to: 5 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
Productheptahelical transmembrane protein 2, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589033
GenbankXM_018127833.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g013220Tc09v2_g013220Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p013220.1Tc09v2_p013220.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto449860auto449860Theobroma cacaoexon
exon-auto449861auto449861Theobroma cacaoexon
exon-auto449862auto449862Theobroma cacaoexon
exon-auto449863auto449863Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto449864auto449864Theobroma cacaoCDS
CDS-auto449865auto449865Theobroma cacaoCDS
CDS-auto449866auto449866Theobroma cacaoCDS
CDS-auto449867auto449867Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t013220.1 ID=Tc09v2_t013220.1|Name=Tc09v2_t013220.1|organism=Theobroma cacao|type=mRNA|length=1077bp
ATGCAAAATCATCATCATCAACATCGTAATCGAAAAGTTGCCGCGGTGAA
GAATGATGATAAGAAACTCGAGCGAGTTGACTCAGCTGAATATGATAAGG
AGGAGAAGAAGAGGAAATTGATGAAGTACGAAGATTTACCTGAGTATTTG
AAAGATAACGAGTTCATTTTGGATCATTACCGATGCGAATGGCCATTGAA
AGACATTTTGTTAAGCCTTTTCTCATTGCACAACGAAACGCTAAACATCT
GGACGCATTTTGGAGGGTTTTTAATATTCGTTGGATTGACGGTGATGAGT
TCCATGGAGGAGTTTGGAGTTGGAGGTTTGATCACCAGTTTTTCCAGTGT
TCATTTGTGCTTGAACTCTAATGCGTATGATTTGGATGCTTCCGTGCAGG
ATTCACACTTAAGGCACATTCCTCAGCCATCTATGTATGAATTGCAGAAA
GAAGATAAATATGACTCTATTCCAAAATGGCCCTGGTTTGTTTTCTTGTC
TGGTACTATGGGCTGCTTGGTTTGCAGCTCGGTCTCACACCTCTTTGCTT
GCCATTCCAGACGCTTTAACCTCTTCTTCTGGCGCCTAGACTATGCTGGC
ATCTCTCTTATGATAGTCTGCTCCTTCTTTGCACCCATCTATTATGCCTT
CTTCTGCCACACATATTCACGGCTCTTTTATCTCACATCCATAACAGTGC
TTGGAATCCTTGCCATCATCACTCTGCTAGCACCTGCTCTCTCAGCACCC
CGTTTCCGATCCTTTCGAGCTACATTATTCCTCACAATGGGTTTCTCAGG
GGTGATCCCGGCAGCACATGCAGTTGCCCTGCACTGGGGCCATCCGCACA
TATTCGTATCCCTTGGATATGAGCTTGCGATGGCCTTTCTATACGCTGCG
GGAGCTGCAGTTTACACTAGCAGAATACCAGAGCGGTGGAAGCCCGGTGC
ATTTGATATTGCAGGGCACAGCCATCAAATATTTCATGTATTTGTTGTTC
TCGGGGCACTTGCTCATGGTGCTGCCACACTAGTGATTATGGATTTTCGC
CGGGAAACAGCAACCTGCGGGTATTAG
back to top

protein sequence of Tc09v2_p013220.1

>Tc09v2_p013220.1 ID=Tc09v2_p013220.1|Name=Tc09v2_p013220.1|organism=Theobroma cacao|type=polypeptide|length=359bp
MQNHHHQHRNRKVAAVKNDDKKLERVDSAEYDKEEKKRKLMKYEDLPEYL
KDNEFILDHYRCEWPLKDILLSLFSLHNETLNIWTHFGGFLIFVGLTVMS
SMEEFGVGGLITSFSSVHLCLNSNAYDLDASVQDSHLRHIPQPSMYELQK
EDKYDSIPKWPWFVFLSGTMGCLVCSSVSHLFACHSRRFNLFFWRLDYAG
ISLMIVCSFFAPIYYAFFCHTYSRLFYLTSITVLGILAIITLLAPALSAP
RFRSFRATLFLTMGFSGVIPAAHAVALHWGHPHIFVSLGYELAMAFLYAA
GAAVYTSRIPERWKPGAFDIAGHSHQIFHVFVVLGALAHGAATLVIMDFR
RETATCGY*
back to top