Tc09v2_t011660.1

Overview
NameTc09v2_t011660.1
Unique NameTc09v2_t011660.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2205
Properties
Property NameValue
NoteArogenate dehydrogenase 1, chloroplastic
Model evidenceSupporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Productarogenate dehydrogenase 1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588852
GenbankXM_018126603.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g011660Tc09v2_g011660Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p011660.1Tc09v2_p011660.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto446348auto446348Theobroma cacaoexon
exon-auto446349auto446349Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto446350auto446350Theobroma cacaoCDS
CDS-auto446351auto446351Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t011660.1 ID=Tc09v2_t011660.1|Name=Tc09v2_t011660.1|organism=Theobroma cacao|type=mRNA|length=2205bp
ATGGCTATGCCATCACTTTCCTTCCTCCACCAATCGCCTCCAAAACCTTC
ACATGTCTATTTCTGTAACCCATCTCCTCCGCCACTTTTCCTCCAATCTC
CTTCTTTTGTTTACATGACGACACCCCTCTCTCTGCATTCCTCCAAAGCA
CTCCAAATCAGGTCGTCCTTCTCCTCAACATCGACTTCCGAACCTACCCA
AGACCCTGTCAAGCTTGCTTTTTCTGTCAATTCAACCCTTAAAATTGCCA
TCATAGGCTTTGGAAACTACGGTCAACACCTGGCTAAAACCCTGGTAGCT
CAAGGACACAGTCTTTTAGCCTACTCGAGATCCGACCATTCCCACATTGC
TCAAGAGCTTGGAGTCTCCTTCTTTCTAAACCCCAGTGACCTTTGCGAAC
AACACCCTGATGTCATCCTCCTCTGTACTTCGATTATCTCCACCGAACAA
GTCTTGAAATCTCTTCCTCTAAAAAGACTGAAGCGGTCCACATTGTTTGT
CGATGTCCTCTCCGTCAAAGAGTTCGCCAAGAACCTCCTCCTCGACGTCT
TGCCTCCTGATTTCGACATCATTTGTTCCCACCCCATGTTCGGACCACAA
AGCGCCAAACAAAGCTGGGAAAACCTCTTCTTTATGTACGAAAAGGTTAG
AATTGGGAACGAATCCTCCAGGGTCCAAAGATGCAACGATTTTCTCGCAA
TATTTGAAAGAGAGGGGTGTAAAATGGTGGAAATGAGCTGTCAAGAGCAC
GACAAGTTGGCAGCCGGGTCACAGTTTATGACGCACACGGTAGGCAGGGT
TTTGGACATGTTGGGGCTGGAGTCAACGCCGATTAATACAAAGGGTTATG
AAACTTTGTTGGAACTGGTGGAGAATACTCGAGGGGACAGCTTTGATCTC
TACTACGGGCTTTTTTTGTATAATAAGAGTGCTTTGGAGATGCTTGAGAA
GTTGGATTTGGGTTTTGATGAGTTGCGGAATGAGCTCTCAGGGAGATTGC
ACGATGTAGTGAAAAAGCAATTGTTCGAGAATGCAGCGAGGGGAAAGAGT
CTGCAAGATAAAAGTTACCAAAATAGTGCTGCAATGGCGTCGATCTTAAA
CTCCCTGAGATCTCAAGATGCTATTCAACCATATGAATACAAAGAGAAGA
TCTCCGAAAGCATTGATGATAGTTCAAAGCTGAAGATTGCGATTGTCGGG
TTTGGAAACTTTGCTCAGTTCCTTGCCAAAGCCTTCGTTCGACAAGGCCA
CTCAGTTTTAGCCTATTCTAGAACAGACTACTGTGCTGTGGCTCAGAAAT
TGAGAGTTTCTTTCTTCTCTGATGCTGATGATCTCTGTGAAGAGCATCCA
GATGTTATTCTTTTATGTACTTCGATTCTTTCCACTGAAAAAGTTCTCAA
CTCATTGCCGCTACAGAGATTGAAGAGAAGCACCCTGTTTGTCGATGTAC
TATCAGTGAAAGAGTTTCCAAGGAACTTGTTTCTTCAAAATTTACCCTCA
GACTTTGATATTCTATGCACACATCCCATGTTTGGACCCGAAAGTGGTAA
AAATGGATGGAAAGGTCTCGCTTTCGTTTTTGATAAAGTGAGGGTCGGAA
GTGATGAAAAAAGGGTAGCAAGGTGCAATAGAGTCCTCGACGTTTTTGCT
CGAGAAGGATGCCGGATGGTGGAGATGTCCTGTGCAGAACATGATTGGCA
TGCAGCAGGGTCACAGTTTATTACACACACGATGGGAAGGGTTTTGGAGA
AGTTAAAGTTGGAGTCCACACCAATTAACACTAAAGGGTATGAAACTTTG
TTGAATTTGGTGGAGAACACCGCTGGGGATAGCTTTGATCTTTATTATGG
ACTTTTTATGTACAATGTAAACGCCCTGGAACAACTAGAGAAGTTAGATT
TGGCTTTTGAGTCATTGAAGAAGCAGCTCTTTGGTAGATTACATGGTCTC
TTTCAGAGGCAATTGGTTGGAAATGCCGACGAGAAGCTTCAAGTACTTCA
GAACGGGAAGGGTAAAGTTTTTCCTAAGAAATCAGTTGTGCCATATGGGG
CCGCAATGCCTGCATCTCCCAAAGAGAAATTCCACGTTTTATGGGAGAAT
TCAGTACTGCAGGCATCCCCTGAAAATAGGCTTGAAGTTGTGGAGGAGAA
GTCTGTTAGGAGAAATGGTGCTGCCCTTGCAACTTCTCCAGAAAGCGTCA
GTTAG
back to top

protein sequence of Tc09v2_p011660.1

>Tc09v2_p011660.1 ID=Tc09v2_p011660.1|Name=Tc09v2_p011660.1|organism=Theobroma cacao|type=polypeptide|length=735bp
MAMPSLSFLHQSPPKPSHVYFCNPSPPPLFLQSPSFVYMTTPLSLHSSKA
LQIRSSFSSTSTSEPTQDPVKLAFSVNSTLKIAIIGFGNYGQHLAKTLVA
QGHSLLAYSRSDHSHIAQELGVSFFLNPSDLCEQHPDVILLCTSIISTEQ
VLKSLPLKRLKRSTLFVDVLSVKEFAKNLLLDVLPPDFDIICSHPMFGPQ
SAKQSWENLFFMYEKVRIGNESSRVQRCNDFLAIFEREGCKMVEMSCQEH
DKLAAGSQFMTHTVGRVLDMLGLESTPINTKGYETLLELVENTRGDSFDL
YYGLFLYNKSALEMLEKLDLGFDELRNELSGRLHDVVKKQLFENAARGKS
LQDKSYQNSAAMASILNSLRSQDAIQPYEYKEKISESIDDSSKLKIAIVG
FGNFAQFLAKAFVRQGHSVLAYSRTDYCAVAQKLRVSFFSDADDLCEEHP
DVILLCTSILSTEKVLNSLPLQRLKRSTLFVDVLSVKEFPRNLFLQNLPS
DFDILCTHPMFGPESGKNGWKGLAFVFDKVRVGSDEKRVARCNRVLDVFA
REGCRMVEMSCAEHDWHAAGSQFITHTMGRVLEKLKLESTPINTKGYETL
LNLVENTAGDSFDLYYGLFMYNVNALEQLEKLDLAFESLKKQLFGRLHGL
FQRQLVGNADEKLQVLQNGKGKVFPKKSVVPYGAAMPASPKEKFHVLWEN
SVLQASPENRLEVVEEKSVRRNGAALATSPESVS*
back to top