Tc09v2_t011360.1

Overview
NameTc09v2_t011360.1
Unique NameTc09v2_t011360.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2556
Properties
Property NameValue
NoteTetratricopeptide repeat-like superfamily protein
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
ProductCCR4-NOT transcription complex subunit 10, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588817
GenbankXM_007013484.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g011360Tc09v2_g011360Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p011360.1Tc09v2_p011360.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto445692auto445692Theobroma cacaoexon
exon-auto445693auto445693Theobroma cacaoexon
exon-auto445694auto445694Theobroma cacaoexon
exon-auto445695auto445695Theobroma cacaoexon
exon-auto445696auto445696Theobroma cacaoexon
exon-auto445697auto445697Theobroma cacaoexon
exon-auto445698auto445698Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto445699auto445699Theobroma cacaoCDS
CDS-auto445700auto445700Theobroma cacaoCDS
CDS-auto445701auto445701Theobroma cacaoCDS
CDS-auto445702auto445702Theobroma cacaoCDS
CDS-auto445703auto445703Theobroma cacaoCDS
CDS-auto445704auto445704Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t011360.1 ID=Tc09v2_t011360.1|Name=Tc09v2_t011360.1|organism=Theobroma cacao|type=mRNA|length=2556bp
ATGGATTCGAGGGATTCATCATCGTCGTCGGCTCCGAATCGAGATGGTGC
CGCCGGCGACGACGACGGCGTTCTGTCCGTCACTGCTGCTCTTGCTAAAG
ACGCCGCCCTTTACTTCCAGTCTAGAAAGTTTGCCGAGTGCGTCGATGTC
TTGAATCAGCTCAAGCCGAAGAAAGAAGACGATCCGAAGGTTCTTCATAA
TATTGCAATTGCGGAGTTTTTTCGGGATGGTTGCTCAGATCCCAAGAAAT
TGCTTGAAGTCCTTAACAATGTCAAGAAGAGAAGCGAGGAGCTTGCTCAT
GCTTCTGGAGAACAGGTGGAGTCTGGTAACAATGTTGGAAATAAAGGTAG
TTCAGGTTCAAAAGGAAGTGGTACAATAACACAACAGTTTTCTGGTTCAA
ATAGTGCCAGTATTATTTACACAGATGAGTTTGATACCTCTGTGGCTGCT
TTAAACATAGCGGTCATTTGGTTCCATCTTCATGAATATGCAAAGGCATT
ATCAGTTCTTGAACCTCTGTATCAAAGCATTGAACCCATAGATGAGACAA
CAGCTCTTCATATCTGCCTTTTGTTGCTGGATGTTGTGCTAGCCTGCCAT
GATGCTTCAAAATCTGCTGATGTATTGAATTATTTGGAAAAGGCATTTGG
CGTTGGCAATGTCAGTCAGGGGGACAATGGTAACATGGTTGCCCAACAAT
CCACGAGTCTAGTAGGAAAATCATCCTCTGTACCAAGCAGCTCATTGGTC
TCAGATACTTCTAGTTCAGACTTAGCTGCTAGTGTAAATGCCTCTGAGAA
TCCTCTATCAAGAACTTTATCAGAGGACCCACTGGATGAAATGTTTTCGA
CACTGGATATTGGTGGACAAAACTTAGCAAGGTCTGCTGGTCTTACATCT
GCAGATGATCTTCCCAGGACCACAGTTGATAGATCTATCTCTGGTGTTGA
TCTGAAGCTCAAGTTGCAACTTTACAAGGTTCAGTTTTTGCTTCTCACTA
GAAATGTAAAGATAGCAAAGCGTGAAGTCAAGCTTGCTATGAACATTGCT
CGAGGGAGAGATTCATCTATGGCTCTCCTCTTGAAGGCCCAGCTTGAGTA
TGCTCGTGGAAACCATCGAAAAGCCATCAAGTTGTTGATGGCATCAAGTA
ATCGGGCAGATGCAGCAATTTCAAGCATGTTTAACAACAATCTAGGCTGC
ATATACTATCAACTTGGGAAGTATCATACATCTGCAGTGTTCTTTTCCAA
GGCACTGAGTAGTTGTTCATCTCTGCAGAAGGAGAAGCCTCTAAAGCTAT
TAACATTCTCGCAGGATAAATCTCTTGTCATAACATATAACTGTGGGTTG
CAGTACTTGGCCTGTGGGAAACCAATACTGGCTGCTCGTTGTTTCCAGAA
AGCAAGTTTAATTTTCTACAAAAGACCCCTCTTGTGGCTTCGGCTTGCCG
AATGTTGTCTAATGGCTGCAGAGAAAGGACTTGTAAAAGGAAGTTGTGCT
TCATCAGACAGATCAGAAATTAGAGTCAATGTTATTGGAAAGGGTAGGTG
GAGGCAACTTCTAATTGAAGACGGAATTTCAAGGAATGGACTCGTAGATT
CTTCTGAAAAGGATGACTGGGCTTTAGGTATTGATGGGCAGCCTAAGCTT
TCATTGTCACTTGCTAGGCAGTGTCTCTATGATGCACTGCACTTGTTGAA
CTGTTCTGAGTGGAGTAATTCAAAGTCTGCTTTACCCTCCAATGCCTCCT
TAGAGGAAAATGAAGATGGAGCATCTTCCAAGAACTCAAACCATAAGAAC
TTATCTGGAATTGATTCCAAGGCTTCAACTATGTCAGTAGGTCTAGTTAA
CTCAAATGGGGATGTGAAAGAGCCAAAGGGGGGAACTAATCAGGAGATTA
TTCAGAACTCCATCTCCTATTATGAAGGTATTTGCAGAAGAGAAAATCAG
ATGATTAAGCAGGCTCTTCTTGCTAATTTGGCATATGTAGAGTTAGAACT
GGAAAATCCTTTGAAGGCCCTTTCTGCAGCACGATCTCTGTTAGAACTAC
CAGGTTGTTCAAGAATTTACATCTTTCTAGGTCATGTCTATGTGGCAGAG
GCTCTCTGCTTGCTGAACAAGCCTAAGGAAGCTGCAGAGCATTTATCCTT
TTATTTGTCTGAGGGAAATAATGTTGAATTGCCGTTTGGTCAAGAGGACT
GTGAACAGTGGCGAGTGGAAAAACCTGTTGATTGTGAAGAATCAACTGGA
GCAGCATCAGCCAAGAATCCTTCCCCTGAGGGCTTGGTGGATTTCATGTT
TCTTAATCCAGAGGAGGCACGTGGAACCCTTTATGCAAATCTTGCTGCTG
TGTCTGCAATACAAGGTGAACTCGAGCGGGCCCACCATTTTCTGAGGCAA
GCATTGTCCCTGGTACCCAACAGTAGCGAAGCCACTATGACTGCAATATA
TGTTGATCTCATGCTTGGTAAGTCGCAAGACGCTCTGTCCAAGTTAAAAC
GTTGTAGTCATGTCAGGTTCCTTCCCAGCAGCCTACAGCTGAATAAATCC
TCGTAA
back to top

protein sequence of Tc09v2_p011360.1

>Tc09v2_p011360.1 ID=Tc09v2_p011360.1|Name=Tc09v2_p011360.1|organism=Theobroma cacao|type=polypeptide|length=852bp
MDSRDSSSSSAPNRDGAAGDDDGVLSVTAALAKDAALYFQSRKFAECVDV
LNQLKPKKEDDPKVLHNIAIAEFFRDGCSDPKKLLEVLNNVKKRSEELAH
ASGEQVESGNNVGNKGSSGSKGSGTITQQFSGSNSASIIYTDEFDTSVAA
LNIAVIWFHLHEYAKALSVLEPLYQSIEPIDETTALHICLLLLDVVLACH
DASKSADVLNYLEKAFGVGNVSQGDNGNMVAQQSTSLVGKSSSVPSSSLV
SDTSSSDLAASVNASENPLSRTLSEDPLDEMFSTLDIGGQNLARSAGLTS
ADDLPRTTVDRSISGVDLKLKLQLYKVQFLLLTRNVKIAKREVKLAMNIA
RGRDSSMALLLKAQLEYARGNHRKAIKLLMASSNRADAAISSMFNNNLGC
IYYQLGKYHTSAVFFSKALSSCSSLQKEKPLKLLTFSQDKSLVITYNCGL
QYLACGKPILAARCFQKASLIFYKRPLLWLRLAECCLMAAEKGLVKGSCA
SSDRSEIRVNVIGKGRWRQLLIEDGISRNGLVDSSEKDDWALGIDGQPKL
SLSLARQCLYDALHLLNCSEWSNSKSALPSNASLEENEDGASSKNSNHKN
LSGIDSKASTMSVGLVNSNGDVKEPKGGTNQEIIQNSISYYEGICRRENQ
MIKQALLANLAYVELELENPLKALSAARSLLELPGCSRIYIFLGHVYVAE
ALCLLNKPKEAAEHLSFYLSEGNNVELPFGQEDCEQWRVEKPVDCEESTG
AASAKNPSPEGLVDFMFLNPEEARGTLYANLAAVSAIQGELERAHHFLRQ
ALSLVPNSSEATMTAIYVDLMLGKSQDALSKLKRCSHVRFLPSSLQLNKS
S*
back to top