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Properties
Property Name | Value |
Note | Telomere-associated protein RIF1, putative |
Model evidence | Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns |
Product | uncharacterized LOC18588816, transcript variant X2 |
Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Tc09v2_t011350.2 ID=Tc09v2_t011350.2|Name=Tc09v2_t011350.2|organism=Theobroma cacao|type=mRNA|length=3402bp ATGTCGAATGTCACCGACCAGACGGAAGAAATCAAAACTTTAATATCATC AAATTCCAAAACAAACAAATCGTTCGGTTACTCAACTCTCTTACACTTCC AAGAACAGTCCAGTGACAGTCCTCCTTCAATCCAAGCCCTAGCTCAATGT TCTCGCTGCCTTATCCCTTTAATCGTCGCTGATATCCACGATGAAGATGA AGAAATAGCTGCTCAAGCTTTGAAGTGTTTGGGATTTATGATCTATCATT CTTCCCTTGTTGCTACAATTCCAGCTGAAGATGCTAAGCTGGTTTTAGAG TCGGTGGCTAAACTCATTTCTGTCACAAAAATGAAGTCCCTTTGCAATTT AGGCGTGTGGTGTATATCAATTCAACAATTTGATGTCGCAGTTTTAGCTG CCTGCTTCAATACATTGTTGAGGGCAGTTGTTCATGCCCTTGATAATCCT ATTGGCTCATTGTCAACAACATTTGAGGCCATGCAGGCTGTGACAAAGTT AACTGCCCAATTGAGTGAAATGATGAGAGAATCATCACACCTATGGGCAC CTTTAATTTATAGAAGATTCCTCTGCTGTGATAAGAGAGAGCGGGATATG TCTGAGAGGTGTTTTTTGAAGATTAGGTCCACAATATTTCCTCCTCCAAT AAATCTTTCCAAGGCTATCATTCAAGACATGAAGCAAAAATTGCTGACAG GGATGAAGGACCAGTTAGACAAGGGCATGAAGGTTCAAACTGTCCAGGCG TGGGGATGGTTTATCTGCTTCCTAGGATCTGATGCCTTCAAGAACAGACA TCTAGTAAATGAGATGTTGAAAGTCCCTGAGCAGACATTTCAAGATCACA ATCCACAAGTCCAGATTGCTTCACTGGTTGCCTGGGAAGGTCTTATTGAT GCCCTTGTTCATCCTCCAATACTGGCTTGCAAGAAAAATGTAACCGTACA GAATGGAATTCAATGCTTACAAACATCCCCAGGGAAAAGCAGTGAAATGC AGTTAAATGGATTTTCAAAATGCTTAAAGCTCATTATGACACCTCTAATA GTTATCATTTTGAGCAAATGTGATGTATCTGTTCACGTCTCCTGCTTGAA CACATGGTGTTATCTTCTACATAAACTTGATAGCTCCATCAACTCTCCTT TGGTAAATAAACTGGTATTGGATCCTATATTTGAAGCAATTTTTAAAATA GGACCAGGTAGTAAAAGTATCTGGCTGTGGAATTTGTGCCTGGATTTGCT TGATGATTGCATATCAGTGAACTGTGCAGATTTGAACTCTAATCTAAAGG ACCAGGTAAACCTTTCTTTATCAGCTAGAACCTTCATTCCTGTTCCTTGT ACATCTGGCAGATATTCATGGAAGCAATATCCTATTAAATGGTTGCCATG GGAGCTCAGTCAGTTGGATTTCTACTTAAAGCTGATTGCTATTATTATTA CTCATGTGGCTATGGTAACAGCTGCCCCTGAAAGCAGAAAATCAGCTTGT GATGCTTCTGTGAGGATATTTAGATCTGTTTTAAAGGGAGTCCATATGGA GTTTAGAAATCCGTCAAATAATTATTATAATATTATGTTCTGTTTGAGCA CTATATTAAAGTTCATTAAGAAAATAGGCGAAGATGCTAGTTCAGAAGGT GGTGGATTTAGTGACTTGTTTAATACTTCCGTTCATTTTATAGAGGTAGT TGCTGAGGAGTTAGAACCTTCTATTGTTGGATCCCCTCTTTATAAAGTGG CTTTAGACATCAAGTACATTGGCAGTCTGGATTCAGTTGATATTAAACAT GCAAAAATACTGGATCAGCATTCTATTGCTTATATGGATATGGTTTCACC TATGGTTTATCTAACTGTACTGTACTTCAGTTTGGTGGTTCAGTTAACTA TAAATACACTTGAAATGGAATTGATTCTACAAAGGTTTCAAAGTTTTTCT AAATGTGGACTGTCTTCATATGATCCCCTGGAAAGTTTTGTAGCTTCTGT TGGTTTACTGTACAGGCACATGGGCTTAAACTACATAGAGATATGGATGG CAATAGCGAAAGGTCTGAATGACTATATTGATGGTATGAAGGATCTCTCC GTATTCAAAACAGATTCTGACAATTCTTTTTATGAGGCCATATGCCATCT CTTATCATATCCATTCATTTTGTTCTCTTGTTGTCAGAAAGATTTAAACC CGTTGAAATCTAGTGACTCCTTGAAAGAATGTTTTGTTTTATCAGAGAGA AAACTTGAACAGGCCATTGAGGTTTGGAAGTCATTATATGGTTCTGTTAT CGTTGCAGACTTTAAGTCTTCTGCTACCAACACTTTTAGTGGTGATCTGT GTGCAATGTTAAATAGGTGTTTTGATGAATATGGTAGCCTGTTTGAGCAT AAGAGTGAGCTTGGTTTATATTACAAGGATCTGGAGCTTGCTTGCCTTTC TTTCTCTGGAAAGGTTGTGGTATGTATTCTGAAACAGAAGCTGACTTCAG ATACAAGTTCATATGGAAGTGGAAAAGAATGTGTTGGTGACTGCAATATA TCCAGTGACATTAACAATATTTTAAAATTTGCTTCCAGAGTCATGAAGTA CATAAATATAGGAACAGAACCACTGGCAGGTCTTGTGAGTTCAAGGGTAT GTTCTGCGTTGGCATGCTTCATTCGTTGCCTTCACTTGAAGCGAGATATT CTTTCAGTTTTTGAGATAATATCCGGTCAACTGCTTCAATGGCTGTCACA TCAAGAGATACAGGATGAACATGCCGAAGATCAACTTGGAATTCTGTGGG CTGAGATCCTTAATTGTTTACGGAGGAGCCAGCCACCGCTAACTTTTGAT TCTTGTTTCCTCAAACTTCAAGCATGCCTCCTTGAGAAAACACTTGGTCA TCCAAATGTCTTGATTTCAGACCCTACCATCATCTTTTGGAACTCCACAT ATGGCAAGCAAATCAACTTGGAGTATCCTCAAAATCTGCTTCATGTTTTA GACAAGCTGTCAAGAAATGGAAGAATAAACCTCCACAATAAAAGCAAATC AGTTCTGGAAAGATGGTCTATGTCAGAAAACAATACTGCTCCACGGAGTT GCAAGGTCACTGCAAAACAGAACAGGAGCTCAAAGAGAGTAGAGTTGGAG CATACGATTGCTCAATCTAACCAAAAGCATAAACCACCCTCGTGTTCAAA ACGGAAAAGGCTAGAACTAACCGAGCATCAAAAGGAAGTGAGACAAGCAC AGCAGGGAAGGGAGAGGGACTGCAGTGGACATGGTCCTGGGATCAGAACT TATACTGGTCTTGATTTTTCACAAGGAAACGAGGACTCGCAGGAGAGTCA GGACATTCGGAATTCAGAAGCCTTCTTGGAGATATTGAGAAAAGTTGCAT GA back to topprotein sequence of Tc09v2_p011350.2 >Tc09v2_p011350.2 ID=Tc09v2_p011350.2|Name=Tc09v2_p011350.2|organism=Theobroma cacao|type=polypeptide|length=1134bp
MSNVTDQTEEIKTLISSNSKTNKSFGYSTLLHFQEQSSDSPPSIQALAQC SRCLIPLIVADIHDEDEEIAAQALKCLGFMIYHSSLVATIPAEDAKLVLE SVAKLISVTKMKSLCNLGVWCISIQQFDVAVLAACFNTLLRAVVHALDNP IGSLSTTFEAMQAVTKLTAQLSEMMRESSHLWAPLIYRRFLCCDKRERDM SERCFLKIRSTIFPPPINLSKAIIQDMKQKLLTGMKDQLDKGMKVQTVQA WGWFICFLGSDAFKNRHLVNEMLKVPEQTFQDHNPQVQIASLVAWEGLID ALVHPPILACKKNVTVQNGIQCLQTSPGKSSEMQLNGFSKCLKLIMTPLI VIILSKCDVSVHVSCLNTWCYLLHKLDSSINSPLVNKLVLDPIFEAIFKI GPGSKSIWLWNLCLDLLDDCISVNCADLNSNLKDQVNLSLSARTFIPVPC TSGRYSWKQYPIKWLPWELSQLDFYLKLIAIIITHVAMVTAAPESRKSAC DASVRIFRSVLKGVHMEFRNPSNNYYNIMFCLSTILKFIKKIGEDASSEG GGFSDLFNTSVHFIEVVAEELEPSIVGSPLYKVALDIKYIGSLDSVDIKH AKILDQHSIAYMDMVSPMVYLTVLYFSLVVQLTINTLEMELILQRFQSFS KCGLSSYDPLESFVASVGLLYRHMGLNYIEIWMAIAKGLNDYIDGMKDLS VFKTDSDNSFYEAICHLLSYPFILFSCCQKDLNPLKSSDSLKECFVLSER KLEQAIEVWKSLYGSVIVADFKSSATNTFSGDLCAMLNRCFDEYGSLFEH KSELGLYYKDLELACLSFSGKVVVCILKQKLTSDTSSYGSGKECVGDCNI SSDINNILKFASRVMKYINIGTEPLAGLVSSRVCSALACFIRCLHLKRDI LSVFEIISGQLLQWLSHQEIQDEHAEDQLGILWAEILNCLRRSQPPLTFD SCFLKLQACLLEKTLGHPNVLISDPTIIFWNSTYGKQINLEYPQNLLHVL DKLSRNGRINLHNKSKSVLERWSMSENNTAPRSCKVTAKQNRSSKRVELE HTIAQSNQKHKPPSCSKRKRLELTEHQKEVRQAQQGRERDCSGHGPGIRT YTGLDFSQGNEDSQESQDIRNSEAFLEILRKVA* back to top
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