Tc09v2_t011350.2

Overview
NameTc09v2_t011350.2
Unique NameTc09v2_t011350.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3402
Properties
Property NameValue
NoteTelomere-associated protein RIF1, putative
Model evidenceSupporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Productuncharacterized LOC18588816, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588816
GenbankXM_007013483.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g011350Tc09v2_g011350Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p011350.2Tc09v2_p011350.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto445669auto445669Theobroma cacaoexon
exon-auto445670auto445670Theobroma cacaoexon
exon-auto445671auto445671Theobroma cacaoexon
exon-auto445672auto445672Theobroma cacaoexon
exon-auto445673auto445673Theobroma cacaoexon
exon-auto445674auto445674Theobroma cacaoexon
exon-auto445675auto445675Theobroma cacaoexon
exon-auto445676auto445676Theobroma cacaoexon
exon-auto445677auto445677Theobroma cacaoexon
exon-auto445678auto445678Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto445679auto445679Theobroma cacaoCDS
CDS-auto445680auto445680Theobroma cacaoCDS
CDS-auto445681auto445681Theobroma cacaoCDS
CDS-auto445682auto445682Theobroma cacaoCDS
CDS-auto445683auto445683Theobroma cacaoCDS
CDS-auto445684auto445684Theobroma cacaoCDS
CDS-auto445685auto445685Theobroma cacaoCDS
CDS-auto445686auto445686Theobroma cacaoCDS
CDS-auto445687auto445687Theobroma cacaoCDS
CDS-auto445688auto445688Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t011350.2 ID=Tc09v2_t011350.2|Name=Tc09v2_t011350.2|organism=Theobroma cacao|type=mRNA|length=3402bp
ATGTCGAATGTCACCGACCAGACGGAAGAAATCAAAACTTTAATATCATC
AAATTCCAAAACAAACAAATCGTTCGGTTACTCAACTCTCTTACACTTCC
AAGAACAGTCCAGTGACAGTCCTCCTTCAATCCAAGCCCTAGCTCAATGT
TCTCGCTGCCTTATCCCTTTAATCGTCGCTGATATCCACGATGAAGATGA
AGAAATAGCTGCTCAAGCTTTGAAGTGTTTGGGATTTATGATCTATCATT
CTTCCCTTGTTGCTACAATTCCAGCTGAAGATGCTAAGCTGGTTTTAGAG
TCGGTGGCTAAACTCATTTCTGTCACAAAAATGAAGTCCCTTTGCAATTT
AGGCGTGTGGTGTATATCAATTCAACAATTTGATGTCGCAGTTTTAGCTG
CCTGCTTCAATACATTGTTGAGGGCAGTTGTTCATGCCCTTGATAATCCT
ATTGGCTCATTGTCAACAACATTTGAGGCCATGCAGGCTGTGACAAAGTT
AACTGCCCAATTGAGTGAAATGATGAGAGAATCATCACACCTATGGGCAC
CTTTAATTTATAGAAGATTCCTCTGCTGTGATAAGAGAGAGCGGGATATG
TCTGAGAGGTGTTTTTTGAAGATTAGGTCCACAATATTTCCTCCTCCAAT
AAATCTTTCCAAGGCTATCATTCAAGACATGAAGCAAAAATTGCTGACAG
GGATGAAGGACCAGTTAGACAAGGGCATGAAGGTTCAAACTGTCCAGGCG
TGGGGATGGTTTATCTGCTTCCTAGGATCTGATGCCTTCAAGAACAGACA
TCTAGTAAATGAGATGTTGAAAGTCCCTGAGCAGACATTTCAAGATCACA
ATCCACAAGTCCAGATTGCTTCACTGGTTGCCTGGGAAGGTCTTATTGAT
GCCCTTGTTCATCCTCCAATACTGGCTTGCAAGAAAAATGTAACCGTACA
GAATGGAATTCAATGCTTACAAACATCCCCAGGGAAAAGCAGTGAAATGC
AGTTAAATGGATTTTCAAAATGCTTAAAGCTCATTATGACACCTCTAATA
GTTATCATTTTGAGCAAATGTGATGTATCTGTTCACGTCTCCTGCTTGAA
CACATGGTGTTATCTTCTACATAAACTTGATAGCTCCATCAACTCTCCTT
TGGTAAATAAACTGGTATTGGATCCTATATTTGAAGCAATTTTTAAAATA
GGACCAGGTAGTAAAAGTATCTGGCTGTGGAATTTGTGCCTGGATTTGCT
TGATGATTGCATATCAGTGAACTGTGCAGATTTGAACTCTAATCTAAAGG
ACCAGGTAAACCTTTCTTTATCAGCTAGAACCTTCATTCCTGTTCCTTGT
ACATCTGGCAGATATTCATGGAAGCAATATCCTATTAAATGGTTGCCATG
GGAGCTCAGTCAGTTGGATTTCTACTTAAAGCTGATTGCTATTATTATTA
CTCATGTGGCTATGGTAACAGCTGCCCCTGAAAGCAGAAAATCAGCTTGT
GATGCTTCTGTGAGGATATTTAGATCTGTTTTAAAGGGAGTCCATATGGA
GTTTAGAAATCCGTCAAATAATTATTATAATATTATGTTCTGTTTGAGCA
CTATATTAAAGTTCATTAAGAAAATAGGCGAAGATGCTAGTTCAGAAGGT
GGTGGATTTAGTGACTTGTTTAATACTTCCGTTCATTTTATAGAGGTAGT
TGCTGAGGAGTTAGAACCTTCTATTGTTGGATCCCCTCTTTATAAAGTGG
CTTTAGACATCAAGTACATTGGCAGTCTGGATTCAGTTGATATTAAACAT
GCAAAAATACTGGATCAGCATTCTATTGCTTATATGGATATGGTTTCACC
TATGGTTTATCTAACTGTACTGTACTTCAGTTTGGTGGTTCAGTTAACTA
TAAATACACTTGAAATGGAATTGATTCTACAAAGGTTTCAAAGTTTTTCT
AAATGTGGACTGTCTTCATATGATCCCCTGGAAAGTTTTGTAGCTTCTGT
TGGTTTACTGTACAGGCACATGGGCTTAAACTACATAGAGATATGGATGG
CAATAGCGAAAGGTCTGAATGACTATATTGATGGTATGAAGGATCTCTCC
GTATTCAAAACAGATTCTGACAATTCTTTTTATGAGGCCATATGCCATCT
CTTATCATATCCATTCATTTTGTTCTCTTGTTGTCAGAAAGATTTAAACC
CGTTGAAATCTAGTGACTCCTTGAAAGAATGTTTTGTTTTATCAGAGAGA
AAACTTGAACAGGCCATTGAGGTTTGGAAGTCATTATATGGTTCTGTTAT
CGTTGCAGACTTTAAGTCTTCTGCTACCAACACTTTTAGTGGTGATCTGT
GTGCAATGTTAAATAGGTGTTTTGATGAATATGGTAGCCTGTTTGAGCAT
AAGAGTGAGCTTGGTTTATATTACAAGGATCTGGAGCTTGCTTGCCTTTC
TTTCTCTGGAAAGGTTGTGGTATGTATTCTGAAACAGAAGCTGACTTCAG
ATACAAGTTCATATGGAAGTGGAAAAGAATGTGTTGGTGACTGCAATATA
TCCAGTGACATTAACAATATTTTAAAATTTGCTTCCAGAGTCATGAAGTA
CATAAATATAGGAACAGAACCACTGGCAGGTCTTGTGAGTTCAAGGGTAT
GTTCTGCGTTGGCATGCTTCATTCGTTGCCTTCACTTGAAGCGAGATATT
CTTTCAGTTTTTGAGATAATATCCGGTCAACTGCTTCAATGGCTGTCACA
TCAAGAGATACAGGATGAACATGCCGAAGATCAACTTGGAATTCTGTGGG
CTGAGATCCTTAATTGTTTACGGAGGAGCCAGCCACCGCTAACTTTTGAT
TCTTGTTTCCTCAAACTTCAAGCATGCCTCCTTGAGAAAACACTTGGTCA
TCCAAATGTCTTGATTTCAGACCCTACCATCATCTTTTGGAACTCCACAT
ATGGCAAGCAAATCAACTTGGAGTATCCTCAAAATCTGCTTCATGTTTTA
GACAAGCTGTCAAGAAATGGAAGAATAAACCTCCACAATAAAAGCAAATC
AGTTCTGGAAAGATGGTCTATGTCAGAAAACAATACTGCTCCACGGAGTT
GCAAGGTCACTGCAAAACAGAACAGGAGCTCAAAGAGAGTAGAGTTGGAG
CATACGATTGCTCAATCTAACCAAAAGCATAAACCACCCTCGTGTTCAAA
ACGGAAAAGGCTAGAACTAACCGAGCATCAAAAGGAAGTGAGACAAGCAC
AGCAGGGAAGGGAGAGGGACTGCAGTGGACATGGTCCTGGGATCAGAACT
TATACTGGTCTTGATTTTTCACAAGGAAACGAGGACTCGCAGGAGAGTCA
GGACATTCGGAATTCAGAAGCCTTCTTGGAGATATTGAGAAAAGTTGCAT
GA
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protein sequence of Tc09v2_p011350.2

>Tc09v2_p011350.2 ID=Tc09v2_p011350.2|Name=Tc09v2_p011350.2|organism=Theobroma cacao|type=polypeptide|length=1134bp
MSNVTDQTEEIKTLISSNSKTNKSFGYSTLLHFQEQSSDSPPSIQALAQC
SRCLIPLIVADIHDEDEEIAAQALKCLGFMIYHSSLVATIPAEDAKLVLE
SVAKLISVTKMKSLCNLGVWCISIQQFDVAVLAACFNTLLRAVVHALDNP
IGSLSTTFEAMQAVTKLTAQLSEMMRESSHLWAPLIYRRFLCCDKRERDM
SERCFLKIRSTIFPPPINLSKAIIQDMKQKLLTGMKDQLDKGMKVQTVQA
WGWFICFLGSDAFKNRHLVNEMLKVPEQTFQDHNPQVQIASLVAWEGLID
ALVHPPILACKKNVTVQNGIQCLQTSPGKSSEMQLNGFSKCLKLIMTPLI
VIILSKCDVSVHVSCLNTWCYLLHKLDSSINSPLVNKLVLDPIFEAIFKI
GPGSKSIWLWNLCLDLLDDCISVNCADLNSNLKDQVNLSLSARTFIPVPC
TSGRYSWKQYPIKWLPWELSQLDFYLKLIAIIITHVAMVTAAPESRKSAC
DASVRIFRSVLKGVHMEFRNPSNNYYNIMFCLSTILKFIKKIGEDASSEG
GGFSDLFNTSVHFIEVVAEELEPSIVGSPLYKVALDIKYIGSLDSVDIKH
AKILDQHSIAYMDMVSPMVYLTVLYFSLVVQLTINTLEMELILQRFQSFS
KCGLSSYDPLESFVASVGLLYRHMGLNYIEIWMAIAKGLNDYIDGMKDLS
VFKTDSDNSFYEAICHLLSYPFILFSCCQKDLNPLKSSDSLKECFVLSER
KLEQAIEVWKSLYGSVIVADFKSSATNTFSGDLCAMLNRCFDEYGSLFEH
KSELGLYYKDLELACLSFSGKVVVCILKQKLTSDTSSYGSGKECVGDCNI
SSDINNILKFASRVMKYINIGTEPLAGLVSSRVCSALACFIRCLHLKRDI
LSVFEIISGQLLQWLSHQEIQDEHAEDQLGILWAEILNCLRRSQPPLTFD
SCFLKLQACLLEKTLGHPNVLISDPTIIFWNSTYGKQINLEYPQNLLHVL
DKLSRNGRINLHNKSKSVLERWSMSENNTAPRSCKVTAKQNRSSKRVELE
HTIAQSNQKHKPPSCSKRKRLELTEHQKEVRQAQQGRERDCSGHGPGIRT
YTGLDFSQGNEDSQESQDIRNSEAFLEILRKVA*
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