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Properties
Property Name | Value |
Note | Telomere-associated protein RIF1, putative |
Model evidence | Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
Product | uncharacterized LOC18588816, transcript variant X1 |
Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Tc09v2_t011350.1 ID=Tc09v2_t011350.1|Name=Tc09v2_t011350.1|organism=Theobroma cacao|type=mRNA|length=3405bp ATGTCGAATGTCACCGACCAGACGGAAGAAATCAAAACTTTAATATCATC AAATTCCAAAACAAACAAATCGTTCGGTTACTCAACTCTCTTACACTTCC AAGAACAGTCCAGTGACAGTCCTCCTTCAATCCAAGCCCTAGCTCAATGT TCTCGCTGCCTTATCCCTTTAATCGTCGCTGATATCCACGATGAAGATGA AGAAATAGCTGCTCAAGCTTTGAAGTGTTTGGGATTTATGATCTATCATT CTTCCCTTGTTGCTACAATTCCAGCTGAAGATGCTAAGCTGGTTTTAGAG TCGGTGGCTAAACTCATTTCTGTCACAAAAATGAAGTCCCTTTGCAATTT AGGCGTGTGGTGTATATCAATTCAACAATTTGATGTCGCAGTTTTAGCTG CCTGCTTCAATACATTGTTGAGGGCAGTTGTTCATGCCCTTGATAATCCT ATTGGCTCATTGTCAACAACATTTGAGGCCATGCAGGCTGTGACAAAGTT AACTGCCCAATTGAGTGAAATGATGAGAGAATCATCACACCTATGGGCAC CTTTAATTTATAGAAGATTCCTCTGCTGTGATAAGAGAGAGCGGGATATG TCTGAGAGGTGTTTTTTGAAGATTAGGTCCACAATATTTCCTCCTCCAAT AAATCTTTCCAAGCAGGCTATCATTCAAGACATGAAGCAAAAATTGCTGA CAGGGATGAAGGACCAGTTAGACAAGGGCATGAAGGTTCAAACTGTCCAG GCGTGGGGATGGTTTATCTGCTTCCTAGGATCTGATGCCTTCAAGAACAG ACATCTAGTAAATGAGATGTTGAAAGTCCCTGAGCAGACATTTCAAGATC ACAATCCACAAGTCCAGATTGCTTCACTGGTTGCCTGGGAAGGTCTTATT GATGCCCTTGTTCATCCTCCAATACTGGCTTGCAAGAAAAATGTAACCGT ACAGAATGGAATTCAATGCTTACAAACATCCCCAGGGAAAAGCAGTGAAA TGCAGTTAAATGGATTTTCAAAATGCTTAAAGCTCATTATGACACCTCTA ATAGTTATCATTTTGAGCAAATGTGATGTATCTGTTCACGTCTCCTGCTT GAACACATGGTGTTATCTTCTACATAAACTTGATAGCTCCATCAACTCTC CTTTGGTAAATAAACTGGTATTGGATCCTATATTTGAAGCAATTTTTAAA ATAGGACCAGGTAGTAAAAGTATCTGGCTGTGGAATTTGTGCCTGGATTT GCTTGATGATTGCATATCAGTGAACTGTGCAGATTTGAACTCTAATCTAA AGGACCAGGTAAACCTTTCTTTATCAGCTAGAACCTTCATTCCTGTTCCT TGTACATCTGGCAGATATTCATGGAAGCAATATCCTATTAAATGGTTGCC ATGGGAGCTCAGTCAGTTGGATTTCTACTTAAAGCTGATTGCTATTATTA TTACTCATGTGGCTATGGTAACAGCTGCCCCTGAAAGCAGAAAATCAGCT TGTGATGCTTCTGTGAGGATATTTAGATCTGTTTTAAAGGGAGTCCATAT GGAGTTTAGAAATCCGTCAAATAATTATTATAATATTATGTTCTGTTTGA GCACTATATTAAAGTTCATTAAGAAAATAGGCGAAGATGCTAGTTCAGAA GGTGGTGGATTTAGTGACTTGTTTAATACTTCCGTTCATTTTATAGAGGT AGTTGCTGAGGAGTTAGAACCTTCTATTGTTGGATCCCCTCTTTATAAAG TGGCTTTAGACATCAAGTACATTGGCAGTCTGGATTCAGTTGATATTAAA CATGCAAAAATACTGGATCAGCATTCTATTGCTTATATGGATATGGTTTC ACCTATGGTTTATCTAACTGTACTGTACTTCAGTTTGGTGGTTCAGTTAA CTATAAATACACTTGAAATGGAATTGATTCTACAAAGGTTTCAAAGTTTT TCTAAATGTGGACTGTCTTCATATGATCCCCTGGAAAGTTTTGTAGCTTC TGTTGGTTTACTGTACAGGCACATGGGCTTAAACTACATAGAGATATGGA TGGCAATAGCGAAAGGTCTGAATGACTATATTGATGGTATGAAGGATCTC TCCGTATTCAAAACAGATTCTGACAATTCTTTTTATGAGGCCATATGCCA TCTCTTATCATATCCATTCATTTTGTTCTCTTGTTGTCAGAAAGATTTAA ACCCGTTGAAATCTAGTGACTCCTTGAAAGAATGTTTTGTTTTATCAGAG AGAAAACTTGAACAGGCCATTGAGGTTTGGAAGTCATTATATGGTTCTGT TATCGTTGCAGACTTTAAGTCTTCTGCTACCAACACTTTTAGTGGTGATC TGTGTGCAATGTTAAATAGGTGTTTTGATGAATATGGTAGCCTGTTTGAG CATAAGAGTGAGCTTGGTTTATATTACAAGGATCTGGAGCTTGCTTGCCT TTCTTTCTCTGGAAAGGTTGTGGTATGTATTCTGAAACAGAAGCTGACTT CAGATACAAGTTCATATGGAAGTGGAAAAGAATGTGTTGGTGACTGCAAT ATATCCAGTGACATTAACAATATTTTAAAATTTGCTTCCAGAGTCATGAA GTACATAAATATAGGAACAGAACCACTGGCAGGTCTTGTGAGTTCAAGGG TATGTTCTGCGTTGGCATGCTTCATTCGTTGCCTTCACTTGAAGCGAGAT ATTCTTTCAGTTTTTGAGATAATATCCGGTCAACTGCTTCAATGGCTGTC ACATCAAGAGATACAGGATGAACATGCCGAAGATCAACTTGGAATTCTGT GGGCTGAGATCCTTAATTGTTTACGGAGGAGCCAGCCACCGCTAACTTTT GATTCTTGTTTCCTCAAACTTCAAGCATGCCTCCTTGAGAAAACACTTGG TCATCCAAATGTCTTGATTTCAGACCCTACCATCATCTTTTGGAACTCCA CATATGGCAAGCAAATCAACTTGGAGTATCCTCAAAATCTGCTTCATGTT TTAGACAAGCTGTCAAGAAATGGAAGAATAAACCTCCACAATAAAAGCAA ATCAGTTCTGGAAAGATGGTCTATGTCAGAAAACAATACTGCTCCACGGA GTTGCAAGGTCACTGCAAAACAGAACAGGAGCTCAAAGAGAGTAGAGTTG GAGCATACGATTGCTCAATCTAACCAAAAGCATAAACCACCCTCGTGTTC AAAACGGAAAAGGCTAGAACTAACCGAGCATCAAAAGGAAGTGAGACAAG CACAGCAGGGAAGGGAGAGGGACTGCAGTGGACATGGTCCTGGGATCAGA ACTTATACTGGTCTTGATTTTTCACAAGGAAACGAGGACTCGCAGGAGAG TCAGGACATTCGGAATTCAGAAGCCTTCTTGGAGATATTGAGAAAAGTTG CATGA back to topprotein sequence of Tc09v2_p011350.1 >Tc09v2_p011350.1 ID=Tc09v2_p011350.1|Name=Tc09v2_p011350.1|organism=Theobroma cacao|type=polypeptide|length=1135bp
MSNVTDQTEEIKTLISSNSKTNKSFGYSTLLHFQEQSSDSPPSIQALAQC SRCLIPLIVADIHDEDEEIAAQALKCLGFMIYHSSLVATIPAEDAKLVLE SVAKLISVTKMKSLCNLGVWCISIQQFDVAVLAACFNTLLRAVVHALDNP IGSLSTTFEAMQAVTKLTAQLSEMMRESSHLWAPLIYRRFLCCDKRERDM SERCFLKIRSTIFPPPINLSKQAIIQDMKQKLLTGMKDQLDKGMKVQTVQ AWGWFICFLGSDAFKNRHLVNEMLKVPEQTFQDHNPQVQIASLVAWEGLI DALVHPPILACKKNVTVQNGIQCLQTSPGKSSEMQLNGFSKCLKLIMTPL IVIILSKCDVSVHVSCLNTWCYLLHKLDSSINSPLVNKLVLDPIFEAIFK IGPGSKSIWLWNLCLDLLDDCISVNCADLNSNLKDQVNLSLSARTFIPVP CTSGRYSWKQYPIKWLPWELSQLDFYLKLIAIIITHVAMVTAAPESRKSA CDASVRIFRSVLKGVHMEFRNPSNNYYNIMFCLSTILKFIKKIGEDASSE GGGFSDLFNTSVHFIEVVAEELEPSIVGSPLYKVALDIKYIGSLDSVDIK HAKILDQHSIAYMDMVSPMVYLTVLYFSLVVQLTINTLEMELILQRFQSF SKCGLSSYDPLESFVASVGLLYRHMGLNYIEIWMAIAKGLNDYIDGMKDL SVFKTDSDNSFYEAICHLLSYPFILFSCCQKDLNPLKSSDSLKECFVLSE RKLEQAIEVWKSLYGSVIVADFKSSATNTFSGDLCAMLNRCFDEYGSLFE HKSELGLYYKDLELACLSFSGKVVVCILKQKLTSDTSSYGSGKECVGDCN ISSDINNILKFASRVMKYINIGTEPLAGLVSSRVCSALACFIRCLHLKRD ILSVFEIISGQLLQWLSHQEIQDEHAEDQLGILWAEILNCLRRSQPPLTF DSCFLKLQACLLEKTLGHPNVLISDPTIIFWNSTYGKQINLEYPQNLLHV LDKLSRNGRINLHNKSKSVLERWSMSENNTAPRSCKVTAKQNRSSKRVEL EHTIAQSNQKHKPPSCSKRKRLELTEHQKEVRQAQQGRERDCSGHGPGIR TYTGLDFSQGNEDSQESQDIRNSEAFLEILRKVA* back to top
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