Tc09v2_t011350.1

Overview
NameTc09v2_t011350.1
Unique NameTc09v2_t011350.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3405
Properties
Property NameValue
NoteTelomere-associated protein RIF1, putative
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Productuncharacterized LOC18588816, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588816
GenbankXM_018126422.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g011350Tc09v2_g011350Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p011350.1Tc09v2_p011350.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto445647auto445647Theobroma cacaoexon
exon-auto445648auto445648Theobroma cacaoexon
exon-auto445649auto445649Theobroma cacaoexon
exon-auto445650auto445650Theobroma cacaoexon
exon-auto445651auto445651Theobroma cacaoexon
exon-auto445652auto445652Theobroma cacaoexon
exon-auto445653auto445653Theobroma cacaoexon
exon-auto445654auto445654Theobroma cacaoexon
exon-auto445655auto445655Theobroma cacaoexon
exon-auto445656auto445656Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto445657auto445657Theobroma cacaoCDS
CDS-auto445658auto445658Theobroma cacaoCDS
CDS-auto445659auto445659Theobroma cacaoCDS
CDS-auto445660auto445660Theobroma cacaoCDS
CDS-auto445661auto445661Theobroma cacaoCDS
CDS-auto445662auto445662Theobroma cacaoCDS
CDS-auto445663auto445663Theobroma cacaoCDS
CDS-auto445664auto445664Theobroma cacaoCDS
CDS-auto445665auto445665Theobroma cacaoCDS
CDS-auto445666auto445666Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t011350.1 ID=Tc09v2_t011350.1|Name=Tc09v2_t011350.1|organism=Theobroma cacao|type=mRNA|length=3405bp
ATGTCGAATGTCACCGACCAGACGGAAGAAATCAAAACTTTAATATCATC
AAATTCCAAAACAAACAAATCGTTCGGTTACTCAACTCTCTTACACTTCC
AAGAACAGTCCAGTGACAGTCCTCCTTCAATCCAAGCCCTAGCTCAATGT
TCTCGCTGCCTTATCCCTTTAATCGTCGCTGATATCCACGATGAAGATGA
AGAAATAGCTGCTCAAGCTTTGAAGTGTTTGGGATTTATGATCTATCATT
CTTCCCTTGTTGCTACAATTCCAGCTGAAGATGCTAAGCTGGTTTTAGAG
TCGGTGGCTAAACTCATTTCTGTCACAAAAATGAAGTCCCTTTGCAATTT
AGGCGTGTGGTGTATATCAATTCAACAATTTGATGTCGCAGTTTTAGCTG
CCTGCTTCAATACATTGTTGAGGGCAGTTGTTCATGCCCTTGATAATCCT
ATTGGCTCATTGTCAACAACATTTGAGGCCATGCAGGCTGTGACAAAGTT
AACTGCCCAATTGAGTGAAATGATGAGAGAATCATCACACCTATGGGCAC
CTTTAATTTATAGAAGATTCCTCTGCTGTGATAAGAGAGAGCGGGATATG
TCTGAGAGGTGTTTTTTGAAGATTAGGTCCACAATATTTCCTCCTCCAAT
AAATCTTTCCAAGCAGGCTATCATTCAAGACATGAAGCAAAAATTGCTGA
CAGGGATGAAGGACCAGTTAGACAAGGGCATGAAGGTTCAAACTGTCCAG
GCGTGGGGATGGTTTATCTGCTTCCTAGGATCTGATGCCTTCAAGAACAG
ACATCTAGTAAATGAGATGTTGAAAGTCCCTGAGCAGACATTTCAAGATC
ACAATCCACAAGTCCAGATTGCTTCACTGGTTGCCTGGGAAGGTCTTATT
GATGCCCTTGTTCATCCTCCAATACTGGCTTGCAAGAAAAATGTAACCGT
ACAGAATGGAATTCAATGCTTACAAACATCCCCAGGGAAAAGCAGTGAAA
TGCAGTTAAATGGATTTTCAAAATGCTTAAAGCTCATTATGACACCTCTA
ATAGTTATCATTTTGAGCAAATGTGATGTATCTGTTCACGTCTCCTGCTT
GAACACATGGTGTTATCTTCTACATAAACTTGATAGCTCCATCAACTCTC
CTTTGGTAAATAAACTGGTATTGGATCCTATATTTGAAGCAATTTTTAAA
ATAGGACCAGGTAGTAAAAGTATCTGGCTGTGGAATTTGTGCCTGGATTT
GCTTGATGATTGCATATCAGTGAACTGTGCAGATTTGAACTCTAATCTAA
AGGACCAGGTAAACCTTTCTTTATCAGCTAGAACCTTCATTCCTGTTCCT
TGTACATCTGGCAGATATTCATGGAAGCAATATCCTATTAAATGGTTGCC
ATGGGAGCTCAGTCAGTTGGATTTCTACTTAAAGCTGATTGCTATTATTA
TTACTCATGTGGCTATGGTAACAGCTGCCCCTGAAAGCAGAAAATCAGCT
TGTGATGCTTCTGTGAGGATATTTAGATCTGTTTTAAAGGGAGTCCATAT
GGAGTTTAGAAATCCGTCAAATAATTATTATAATATTATGTTCTGTTTGA
GCACTATATTAAAGTTCATTAAGAAAATAGGCGAAGATGCTAGTTCAGAA
GGTGGTGGATTTAGTGACTTGTTTAATACTTCCGTTCATTTTATAGAGGT
AGTTGCTGAGGAGTTAGAACCTTCTATTGTTGGATCCCCTCTTTATAAAG
TGGCTTTAGACATCAAGTACATTGGCAGTCTGGATTCAGTTGATATTAAA
CATGCAAAAATACTGGATCAGCATTCTATTGCTTATATGGATATGGTTTC
ACCTATGGTTTATCTAACTGTACTGTACTTCAGTTTGGTGGTTCAGTTAA
CTATAAATACACTTGAAATGGAATTGATTCTACAAAGGTTTCAAAGTTTT
TCTAAATGTGGACTGTCTTCATATGATCCCCTGGAAAGTTTTGTAGCTTC
TGTTGGTTTACTGTACAGGCACATGGGCTTAAACTACATAGAGATATGGA
TGGCAATAGCGAAAGGTCTGAATGACTATATTGATGGTATGAAGGATCTC
TCCGTATTCAAAACAGATTCTGACAATTCTTTTTATGAGGCCATATGCCA
TCTCTTATCATATCCATTCATTTTGTTCTCTTGTTGTCAGAAAGATTTAA
ACCCGTTGAAATCTAGTGACTCCTTGAAAGAATGTTTTGTTTTATCAGAG
AGAAAACTTGAACAGGCCATTGAGGTTTGGAAGTCATTATATGGTTCTGT
TATCGTTGCAGACTTTAAGTCTTCTGCTACCAACACTTTTAGTGGTGATC
TGTGTGCAATGTTAAATAGGTGTTTTGATGAATATGGTAGCCTGTTTGAG
CATAAGAGTGAGCTTGGTTTATATTACAAGGATCTGGAGCTTGCTTGCCT
TTCTTTCTCTGGAAAGGTTGTGGTATGTATTCTGAAACAGAAGCTGACTT
CAGATACAAGTTCATATGGAAGTGGAAAAGAATGTGTTGGTGACTGCAAT
ATATCCAGTGACATTAACAATATTTTAAAATTTGCTTCCAGAGTCATGAA
GTACATAAATATAGGAACAGAACCACTGGCAGGTCTTGTGAGTTCAAGGG
TATGTTCTGCGTTGGCATGCTTCATTCGTTGCCTTCACTTGAAGCGAGAT
ATTCTTTCAGTTTTTGAGATAATATCCGGTCAACTGCTTCAATGGCTGTC
ACATCAAGAGATACAGGATGAACATGCCGAAGATCAACTTGGAATTCTGT
GGGCTGAGATCCTTAATTGTTTACGGAGGAGCCAGCCACCGCTAACTTTT
GATTCTTGTTTCCTCAAACTTCAAGCATGCCTCCTTGAGAAAACACTTGG
TCATCCAAATGTCTTGATTTCAGACCCTACCATCATCTTTTGGAACTCCA
CATATGGCAAGCAAATCAACTTGGAGTATCCTCAAAATCTGCTTCATGTT
TTAGACAAGCTGTCAAGAAATGGAAGAATAAACCTCCACAATAAAAGCAA
ATCAGTTCTGGAAAGATGGTCTATGTCAGAAAACAATACTGCTCCACGGA
GTTGCAAGGTCACTGCAAAACAGAACAGGAGCTCAAAGAGAGTAGAGTTG
GAGCATACGATTGCTCAATCTAACCAAAAGCATAAACCACCCTCGTGTTC
AAAACGGAAAAGGCTAGAACTAACCGAGCATCAAAAGGAAGTGAGACAAG
CACAGCAGGGAAGGGAGAGGGACTGCAGTGGACATGGTCCTGGGATCAGA
ACTTATACTGGTCTTGATTTTTCACAAGGAAACGAGGACTCGCAGGAGAG
TCAGGACATTCGGAATTCAGAAGCCTTCTTGGAGATATTGAGAAAAGTTG
CATGA
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protein sequence of Tc09v2_p011350.1

>Tc09v2_p011350.1 ID=Tc09v2_p011350.1|Name=Tc09v2_p011350.1|organism=Theobroma cacao|type=polypeptide|length=1135bp
MSNVTDQTEEIKTLISSNSKTNKSFGYSTLLHFQEQSSDSPPSIQALAQC
SRCLIPLIVADIHDEDEEIAAQALKCLGFMIYHSSLVATIPAEDAKLVLE
SVAKLISVTKMKSLCNLGVWCISIQQFDVAVLAACFNTLLRAVVHALDNP
IGSLSTTFEAMQAVTKLTAQLSEMMRESSHLWAPLIYRRFLCCDKRERDM
SERCFLKIRSTIFPPPINLSKQAIIQDMKQKLLTGMKDQLDKGMKVQTVQ
AWGWFICFLGSDAFKNRHLVNEMLKVPEQTFQDHNPQVQIASLVAWEGLI
DALVHPPILACKKNVTVQNGIQCLQTSPGKSSEMQLNGFSKCLKLIMTPL
IVIILSKCDVSVHVSCLNTWCYLLHKLDSSINSPLVNKLVLDPIFEAIFK
IGPGSKSIWLWNLCLDLLDDCISVNCADLNSNLKDQVNLSLSARTFIPVP
CTSGRYSWKQYPIKWLPWELSQLDFYLKLIAIIITHVAMVTAAPESRKSA
CDASVRIFRSVLKGVHMEFRNPSNNYYNIMFCLSTILKFIKKIGEDASSE
GGGFSDLFNTSVHFIEVVAEELEPSIVGSPLYKVALDIKYIGSLDSVDIK
HAKILDQHSIAYMDMVSPMVYLTVLYFSLVVQLTINTLEMELILQRFQSF
SKCGLSSYDPLESFVASVGLLYRHMGLNYIEIWMAIAKGLNDYIDGMKDL
SVFKTDSDNSFYEAICHLLSYPFILFSCCQKDLNPLKSSDSLKECFVLSE
RKLEQAIEVWKSLYGSVIVADFKSSATNTFSGDLCAMLNRCFDEYGSLFE
HKSELGLYYKDLELACLSFSGKVVVCILKQKLTSDTSSYGSGKECVGDCN
ISSDINNILKFASRVMKYINIGTEPLAGLVSSRVCSALACFIRCLHLKRD
ILSVFEIISGQLLQWLSHQEIQDEHAEDQLGILWAEILNCLRRSQPPLTF
DSCFLKLQACLLEKTLGHPNVLISDPTIIFWNSTYGKQINLEYPQNLLHV
LDKLSRNGRINLHNKSKSVLERWSMSENNTAPRSCKVTAKQNRSSKRVEL
EHTIAQSNQKHKPPSCSKRKRLELTEHQKEVRQAQQGRERDCSGHGPGIR
TYTGLDFSQGNEDSQESQDIRNSEAFLEILRKVA*
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