Tc09v2_t011240.1

Overview
NameTc09v2_t011240.1
Unique NameTc09v2_t011240.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length744
Properties
Property NameValue
NoteAuxin-responsive protein
Model evidenceSupporting evidence includes similarity to: 1 EST, 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productauxin-responsive protein IAA20
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588800
GenbankXM_007013454.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g011240Tc09v2_g011240Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p011240.1Tc09v2_p011240.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto445360auto445360Theobroma cacaoexon
exon-auto445361auto445361Theobroma cacaoexon
exon-auto445362auto445362Theobroma cacaoexon
exon-auto445363auto445363Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto445364auto445364Theobroma cacaoCDS
CDS-auto445365auto445365Theobroma cacaoCDS
CDS-auto445366auto445366Theobroma cacaoCDS
CDS-auto445367auto445367Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t011240.1 ID=Tc09v2_t011240.1|Name=Tc09v2_t011240.1|organism=Theobroma cacao|type=mRNA|length=744bp
ATGTGCATGGAGCTCCAACTGGGACTTGCTCTTCCAAGTACTCCTCCTAT
TCCCATCAAGATGTTCGACCTAAACAGCTACGGTTATGAACCTAGGGAGG
CTTTGGGTTCCAACATTTTGAGCTGGCCTTTGCTAAAACTGGGTCCATGC
GACATTAACAATATTAACAGTAGCAGCAGCAGTAGCTCTAGCAGCAGCGG
TGGCAGCAGAAAACGCGGCTTTGATGAAGTAGTACTGTTTGATGAGAACA
GAGCTGTTCCCAAAACGCTGCCTCTTTTGCTTTGGACTAACCAACCGAAT
GACGAAGATGACCCTAAAGATCTCGAGGACAACTCTTCTTCTGCCATTTT
CAAGAATGATGGAGAGGGTTTAGTGGGGTGGCCACCAGTTAAAACCTGGA
GGAAGAAGCAACGCCGCCAAATTCCTGATGGTGGAGCGCAGAACAATAGG
GTAGCTGCGGCGGCGGACAATGGCTGTGGTGTTAGAGCTTCAAATTCCAC
GTTCGTGAAGGTAAAGATAGAAGGAGTTGCAATTGCTAGGAAAATTGACC
TTAGCGTCCATCATTCCTTTGAAACGCTCACAAGCACCCTGATGAGAATG
TTTGGTATTTCTGATGAGAATTGGAAGTGCTTTAGACTCACTTATCTGGA
CCGCGAAGGAGACTGGTTGCTTGCTGAAGATGTGCCCTGGAGGACCTTCA
TTCGCTCCTTGAAATGCCTCAAATTAATTAGAATCAGAGGCTAG
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protein sequence of Tc09v2_p011240.1

>Tc09v2_p011240.1 ID=Tc09v2_p011240.1|Name=Tc09v2_p011240.1|organism=Theobroma cacao|type=polypeptide|length=248bp
MCMELQLGLALPSTPPIPIKMFDLNSYGYEPREALGSNILSWPLLKLGPC
DINNINSSSSSSSSSSGGSRKRGFDEVVLFDENRAVPKTLPLLLWTNQPN
DEDDPKDLEDNSSSAIFKNDGEGLVGWPPVKTWRKKQRRQIPDGGAQNNR
VAAAADNGCGVRASNSTFVKVKIEGVAIARKIDLSVHHSFETLTSTLMRM
FGISDENWKCFRLTYLDREGDWLLAEDVPWRTFIRSLKCLKLIRIRG*
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