Tc09v2_t010980.1

Overview
NameTc09v2_t010980.1
Unique NameTc09v2_t010980.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1938
Properties
Property NameValue
NoteEIN3-binding F-box protein 1
Model evidenceSupporting evidence includes similarity to: 34 ESTs, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
ProductEIN3-binding F-box protein 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588771
GenbankXM_018127302.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g010980Tc09v2_g010980Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p010980.1Tc09v2_p010980.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto444860auto444860Theobroma cacaoexon
exon-auto444861auto444861Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto444862auto444862Theobroma cacaoCDS
CDS-auto444863auto444863Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t010980.1 ID=Tc09v2_t010980.1|Name=Tc09v2_t010980.1|organism=Theobroma cacao|type=mRNA|length=1938bp
ATGCCTGCTCTTGTTAATTACGGTGGTGATGATGATTTCTATTCTGGGGG
TTCATTTTATACAAATTCCACAGACTTGGGTAGATTGTGTTCAATCAGTT
CCCAAGTGGATGTGTACTGCCCTCCTCGTAAAAGAGCTCGTATTAGTGCC
CCATTTCTCTTCGGAGAAACTGAGTTTGAGCAGAATAAGCAACCATCAAT
TGATGTTCTTCCTGAGGAATGCCTTTTTGAGATCTTCAAACGTCTTCCTG
GGGGCAGAGAAAGGAGCTCCTGTGCTTGCGTCTCAAAGCATTGGCTTATG
CTTCTGACCAGTATTCGTAAGAGTGAATATGAGTCATCAAAGGTGGTCAA
GGAGAATACTGATTTGGTTTCTGAGGATGTTGAGATGATCTCATCTGATG
AAGATGATGGGTATCTTACTAGGTGCTTGGAAGGGAAGAAAGCAACTGAC
ATGAGACTTGCTGCAGTGGCTGTTGGAACAAGTGGTCATGGCGGGCTTGG
AAAGCTTTCTATAAGGGGAAGCAGCTCCTCATGTGGAGTGACCAATTTCG
GGCTATCTGCCATAGCTCGTGGGTGCCCTTCTCTCAAGGCACTGTCTTTG
TGGAACATCCCTTGTGTTGGGGATGAAGGTCTGTCAGAGATAGCTAAAGA
ATGCCTTTTGTTGGAGAAGCTTGACCTTTGCCAGTGCCCCTCAGTTTCCA
ACAAGGGTTTGATCGCAATCGCAGTGAACTGCCCAAATTTGACCTCTTTG
AGCATTGAATCTTGCCCAAAGATTGGTAACGAGGGCCTCCAAGCCATCGG
AAAGCTGTGCCCCAAGCTGCAGTCCATCTCTATCAAGGACTGCCCACTTG
TTGGGGATCATGGAGTTTCAAGCCTGTTGGCATCAGCATCTTCTGTCCTT
TCAAAGGTTAAGCTTCAGGGATTGAACATCACAGATTTTTCTCTTGCTGT
GATTGGGCACTATGGCAAGTCTGTGACAAATCTAATGCTCAGTGGTCTAC
TAAATGTGAGTGAGAAGGGATTTTGGGTCATGGGTAATGCTCAGGGTTTG
CAAAAATTGGCATCTTTGATGATTACTTCTTGCTGGGGGGTAACAGATGT
CAGTCTTGAAGCCATGGGAAAGGGATGCACAAACCTAAAGCAGATGTGCC
TTCGCAGGTGTTGCTTTCTTTCTGATGATGGATTGGTGGCTTTTGCCAAG
TCTGCAGGTTCTCTTGAGTGCCTGCAGTTGGAGGAGTGTAACAGGGTCAC
ACAATCTGGGATTATTCGTGTCCTCTCAAACTGTGGATTAAAATCTCTTA
TGCTAGTAAAGTGCTTGGGAATTAAGGATATGTCCTTGGGAGCTCCTTTG
TCCTCCACTTGCAATTCCCTTAAATCCTTGTCTGTAAGGAACTGCCCGGG
ATTTGGGACTGCCGGCTTGGCTATGGTGGGCAAACTGTGCCCTCAGCTTC
AGCATGTAGATCTGAGTGGGCTCTATGGCATCACAGATGCAGGTCTTCTG
CCTCTTCTTGAGAATTGTGAGGCAGGACTTGTGAAGGTGAACCTGAGCGG
CTGCTTAAATTTGACTGATGAGGTAGTGTTGGCCTTGACCAGACTACATG
GTGGAACCCTCAAGTTGCTCAATCTTGATGGTTGCAGGAGGATCACTGAT
ACAAGTTTGGTGGCTGTTGCAGACAATTGTGTTTTTCTCAGCGATCTGGA
TGTATCAAGGTGTGCGATCACCGATTCTGGTGTTGCTGCCTTGTCTCATG
CTGAGCAACTCAATTTGCAAGTCCTTTCTTTTTCAGGTTGTTCTGGAGTG
TCAAACAAAAGCATGCCTTTCCTGAAAAAATTGGGCAAGACCTTGGTGGG
GTTGAATCTCCAGCACTGCAATTCAATCAGCAGTCGAACTGTTGAGCTGC
TTGTAGAGAGCTTGTGGAGATGTGACACCCTTTTCTAA
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protein sequence of Tc09v2_p010980.1

>Tc09v2_p010980.1 ID=Tc09v2_p010980.1|Name=Tc09v2_p010980.1|organism=Theobroma cacao|type=polypeptide|length=646bp
MPALVNYGGDDDFYSGGSFYTNSTDLGRLCSISSQVDVYCPPRKRARISA
PFLFGETEFEQNKQPSIDVLPEECLFEIFKRLPGGRERSSCACVSKHWLM
LLTSIRKSEYESSKVVKENTDLVSEDVEMISSDEDDGYLTRCLEGKKATD
MRLAAVAVGTSGHGGLGKLSIRGSSSSCGVTNFGLSAIARGCPSLKALSL
WNIPCVGDEGLSEIAKECLLLEKLDLCQCPSVSNKGLIAIAVNCPNLTSL
SIESCPKIGNEGLQAIGKLCPKLQSISIKDCPLVGDHGVSSLLASASSVL
SKVKLQGLNITDFSLAVIGHYGKSVTNLMLSGLLNVSEKGFWVMGNAQGL
QKLASLMITSCWGVTDVSLEAMGKGCTNLKQMCLRRCCFLSDDGLVAFAK
SAGSLECLQLEECNRVTQSGIIRVLSNCGLKSLMLVKCLGIKDMSLGAPL
SSTCNSLKSLSVRNCPGFGTAGLAMVGKLCPQLQHVDLSGLYGITDAGLL
PLLENCEAGLVKVNLSGCLNLTDEVVLALTRLHGGTLKLLNLDGCRRITD
TSLVAVADNCVFLSDLDVSRCAITDSGVAALSHAEQLNLQVLSFSGCSGV
SNKSMPFLKKLGKTLVGLNLQHCNSISSRTVELLVESLWRCDTLF*
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