Tc09v2_t010530.1

Overview
NameTc09v2_t010530.1
Unique NameTc09v2_t010530.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1335
Properties
Property NameValue
NoteNudix hydrolase 19, chloroplastic
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productnudix hydrolase 19, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588722
GenbankXM_007013311.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g010530Tc09v2_g010530Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p010530.1Tc09v2_p010530.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto443847auto443847Theobroma cacaoexon
exon-auto443848auto443848Theobroma cacaoexon
exon-auto443849auto443849Theobroma cacaoexon
exon-auto443850auto443850Theobroma cacaoexon
exon-auto443851auto443851Theobroma cacaoexon
exon-auto443852auto443852Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto443853auto443853Theobroma cacaoCDS
CDS-auto443854auto443854Theobroma cacaoCDS
CDS-auto443855auto443855Theobroma cacaoCDS
CDS-auto443856auto443856Theobroma cacaoCDS
CDS-auto443857auto443857Theobroma cacaoCDS
CDS-auto443858auto443858Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t010530.1 ID=Tc09v2_t010530.1|Name=Tc09v2_t010530.1|organism=Theobroma cacao|type=mRNA|length=1335bp
ATGCTCTCTCTTTCTCGCCTCCTCTCTTCTTCGTCTACTTCCTCTCGTTT
CCTTCTCTCTAAAACCCTAACTCTAACAAAAAGAACCATCATTTCTTCTC
TAACCACGATGTCCATGAGCCTTAATTCCCATGCATTTGCTGGCAATCCT
TTAAGATCCAAAACCCCTAAAACCCATGATCCATTTTCCCCTTCTTCAGC
TTTTGAGTCCCTGAAAACCCGTCTCCTCCAGAACCCAGAAAACCATCCTC
CTCCAGAGTCTCCTCTTTTCAAGGTCTTGCCTTTCAGAAAGGGTAGACCT
TTGGCTTCTTCCTCTGTTACTGGGGATGATGTTGTGCCTAGTTGGCATCT
GGGGTGGATCAGTCTGGCTGATTGTGAGGGTATTTTGGGAAAGTGTGGGC
GCCAGCTGAGGGAGGAGTCTTTGGTTTATTTGGGTTCAAGGGCTGAGGAA
GATGTTGTTTATTGGGCTATTGATGTTTCTGAGGAAGGTGGGTTGGTTCC
TGAATTGGGTGGCAGGCAGTTTTGTTTTGTGGAGCTTAGGACACTAATGG
TGGCTACTGATTGGGCTGATTCTTTGGCTATGGGTGAATTGGCTGTTGCT
GGTCATGCACGGGCATTGCTTGAATGGCATAATTTATCACGATTTTGTGG
ACGTTGTGGAGAGAAAACAGTCCCCAAGGAAGCTGGGAGAAGGAAACAAT
GCTCCAATGAATTATGCAAAATTAGGGTTTACCCTCGTGTTGATCCAGTT
GTCATTATGTTGGTAATTGATAGAGAAAATGATCGTGCACTTTTAAGTAG
ACAGTCCAGATTTGTACCTCGAATGTGGAGTTGCTTAGCTGGATTCATAG
AGCCAGGGGAAAGCTTAGAAGAGGCAGTGAGGAGAGAAACATATGAAGAG
ACTGGTATTGAAGTTGGAGAAGTTGTCTATCATAGTTCTCAGCCGTGGCC
TGTTGGTCCAGGTAGCATACCGTGCCAATTGATGGTCGGGTTTTTTGCGT
ATGCAAAATCTCTTGAAATAGATGTGGATAAGGAAGAATTAGAAGATGCT
CAGTGGCACAGTAGAGAAGATGTAAGGAAAGCATTGACATTTGCTGAGTA
CAAGAAGGCACAAAGAACAGCCGCGACTAAAGTAGATCAAATGTGCAAAG
GAGTTGAGAGGGGACAGAGTTTGTCAGCAGATTTTAATGTGGAAAGTGGG
GAACTTGCTCCAATGTTTATTCCTGGGCCATTCGCAATTGCCTATCACCT
CATTTCTACATGGGCTAATGAAGATCCATCGACTAGTGCTGCAGCTCTAT
TGAAACAACCCAGCAGTTCCATTTCAAATTTATAG
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protein sequence of Tc09v2_p010530.1

>Tc09v2_p010530.1 ID=Tc09v2_p010530.1|Name=Tc09v2_p010530.1|organism=Theobroma cacao|type=polypeptide|length=445bp
MLSLSRLLSSSSTSSRFLLSKTLTLTKRTIISSLTTMSMSLNSHAFAGNP
LRSKTPKTHDPFSPSSAFESLKTRLLQNPENHPPPESPLFKVLPFRKGRP
LASSSVTGDDVVPSWHLGWISLADCEGILGKCGRQLREESLVYLGSRAEE
DVVYWAIDVSEEGGLVPELGGRQFCFVELRTLMVATDWADSLAMGELAVA
GHARALLEWHNLSRFCGRCGEKTVPKEAGRRKQCSNELCKIRVYPRVDPV
VIMLVIDRENDRALLSRQSRFVPRMWSCLAGFIEPGESLEEAVRRETYEE
TGIEVGEVVYHSSQPWPVGPGSIPCQLMVGFFAYAKSLEIDVDKEELEDA
QWHSREDVRKALTFAEYKKAQRTAATKVDQMCKGVERGQSLSADFNVESG
ELAPMFIPGPFAIAYHLISTWANEDPSTSAAALLKQPSSSISNL*
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