Tc09v2_t010160.1

Overview
NameTc09v2_t010160.1
Unique NameTc09v2_t010160.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1629
Properties
Property NameValue
NotePutative DELLA protein GAI
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
ProductDELLA protein SLR1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588682
GenbankXM_007013253.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g010160Tc09v2_g010160Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p010160.1Tc09v2_p010160.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto443282auto443282Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto443283auto443283Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t010160.1 ID=Tc09v2_t010160.1|Name=Tc09v2_t010160.1|organism=Theobroma cacao|type=mRNA|length=1629bp
ATGGTGCCATACGACTCCGCCACGTCAGCGGGGAGTAGCAGCGGCAGCTC
ATCATCATCTTCCTACAAGCCGCCACAGCAGCAGCAGCAAGATATTGATA
GGCTACTCGCCGGAGCTGGATACAAAGTCCGGTCATCGGAGTTACGACAA
GTAGCTCAGAGACTGGAACGACTCGAAATCGCCATGGTTAATTCCCCCGC
AGATTTCTTTCATCTCGCTTCAGATGCTATCCACCGTAACCCTTCCGATC
TCGCCTCCTGGGTCGACTCGCTCCTTTCCGAGTGCACTCAGCCTCCTACT
TGCCCCTCCGAATTCATCATGGATCCTGTAACCAATCAGGCGGTGGTAAA
CAACGCGTGGACTACCACCGAACCTCATACGCCGCAGGTGCACCAGAATA
TTTCTTTCGAACAACAAAGTTTGAATCATCAGTTGACGGTTGTAACGGCC
ATGGAAGAAGATTCCGGTATAAGGTTGGTCCACATGTTGATGATGTGTGC
GGAGTGCGTCCAACGTGGCGACCTCCCATTGGCTACTTCCTTAATCGACG
ACATGCAACGGTTATTGATGCGTGTCAACACCGTTTGTGGCATCGGAAAA
GTTGCAGGACATTTTATCGACGCTTTGAGCTGCCGGATTTTCCAAGGATT
TGGCGGAGGCCCTGTCAACGGTGGCTCCGCTTATGAGAACGAGATTTTGT
ATCATCATTTTTACGAAGCGTGTCCTTACTTGAAATTCGCTCACTTCACC
GCCAATCAGGCTATTCTGGAAGCTTTCGACGGTCACGATTGCGTCCACGT
GGTGGATTTCAATTTGATGCACGGCTTACAATGGCCGGCTTTGATACAAG
CCCTCGCGTTACGTCCCGGTGGACCTCCTTTACTTCGTTTGACCGGCATT
GGACCGCCATCACCAGACGGCCGTGACTCGCTTCGCGAAATAGGTTTACG
GCTTGCCGAGCTGGCTCGCTCCGTCAACGTCCGTTTCACCTTCCGTGGAG
TCGCGGCTTCCAGGCTCGAAGACGTTAAGCCGTGGATGCTTCAGGTTAAT
CCAAAAGAAGCGGTGGCGGTGAACTCAATCATGCAGCTTCACCGCTTACT
AGGAGCTGACCCGACACGGAATTCTTCTATCCAAACGGTTTTGAGTTGGA
TCCGGAGCTTAAACCCGAAAATTATGACTGTCGTTGAACAAGAAGCCAAC
CACAACCAACCCGGTTTTCTGGACCGGTTCACTGAAGCACTTTATTATTA
TTCGACTATGTTCGATTCTTTAGAAGCTTGCACACTTCAACCGGAAAAAG
CTTTAGCCGAGATATACATTCAGAGGGAAATAGCCAACGTCGTGAGCTGT
GAAGGTTCGGCTCGAGTAGAAAGACACGAGCCGTTAGCTAAGTGGAGGAC
GCGGCTTAATGGAGCCGGATTTAGGCCATTACATTTGGGGTCCAACGCAT
TTAAACAAGCTAGCATGTTATTGACTTTGTTCTCGGCGGAAGGGTATTTG
GTCGAAGAAAATGAAGGGTGTCTGACTCTGGGTTGGCATAGCCGCCCTCT
CATTTCGGCTTCGGCTTGGCATGCCGTACCGGATGCGGCAGCTGAGATCC
CGGCTTGGGATGATCATCAACCATCATAA
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protein sequence of Tc09v2_p010160.1

>Tc09v2_p010160.1 ID=Tc09v2_p010160.1|Name=Tc09v2_p010160.1|organism=Theobroma cacao|type=polypeptide|length=543bp
MVPYDSATSAGSSSGSSSSSSYKPPQQQQQDIDRLLAGAGYKVRSSELRQ
VAQRLERLEIAMVNSPADFFHLASDAIHRNPSDLASWVDSLLSECTQPPT
CPSEFIMDPVTNQAVVNNAWTTTEPHTPQVHQNISFEQQSLNHQLTVVTA
MEEDSGIRLVHMLMMCAECVQRGDLPLATSLIDDMQRLLMRVNTVCGIGK
VAGHFIDALSCRIFQGFGGGPVNGGSAYENEILYHHFYEACPYLKFAHFT
ANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGI
GPPSPDGRDSLREIGLRLAELARSVNVRFTFRGVAASRLEDVKPWMLQVN
PKEAVAVNSIMQLHRLLGADPTRNSSIQTVLSWIRSLNPKIMTVVEQEAN
HNQPGFLDRFTEALYYYSTMFDSLEACTLQPEKALAEIYIQREIANVVSC
EGSARVERHEPLAKWRTRLNGAGFRPLHLGSNAFKQASMLLTLFSAEGYL
VEENEGCLTLGWHSRPLISASAWHAVPDAAAEIPAWDDHQPS*
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