Tc09v2_t009840.2

Overview
NameTc09v2_t009840.2
Unique NameTc09v2_t009840.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1353
Properties
Property NameValue
Note3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial
Model evidenceSupporting evidence includes similarity to: 15 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Product3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588641
GenbankXM_007013192.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g009840Tc09v2_g009840Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p009840.2Tc09v2_p009840.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto442335auto442335Theobroma cacaoexon
exon-auto442336auto442336Theobroma cacaoexon
exon-auto442337auto442337Theobroma cacaoexon
exon-auto442338auto442338Theobroma cacaoexon
exon-auto442339auto442339Theobroma cacaoexon
exon-auto442340auto442340Theobroma cacaoexon
exon-auto442341auto442341Theobroma cacaoexon
exon-auto442342auto442342Theobroma cacaoexon
exon-auto442343auto442343Theobroma cacaoexon
exon-auto442344auto442344Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto442345auto442345Theobroma cacaoCDS
CDS-auto442346auto442346Theobroma cacaoCDS
CDS-auto442347auto442347Theobroma cacaoCDS
CDS-auto442348auto442348Theobroma cacaoCDS
CDS-auto442349auto442349Theobroma cacaoCDS
CDS-auto442350auto442350Theobroma cacaoCDS
CDS-auto442351auto442351Theobroma cacaoCDS
CDS-auto442352auto442352Theobroma cacaoCDS
CDS-auto442353auto442353Theobroma cacaoCDS
CDS-auto442354auto442354Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t009840.2 ID=Tc09v2_t009840.2|Name=Tc09v2_t009840.2|organism=Theobroma cacao|type=mRNA|length=1353bp
ATGAAATGCTTTTCAGTGGTCTCAGTTTGTAAACTCGCGACCAAATCTTC
TTCAACATTTCCACTATTCTTGTTCCCAAACAACCCCGCAACATCGGCTG
CTACCGCCACTGCTCGCTTTCCAAGTCGCGCTCCTCGTTCCCTCCGGTTC
CCTATTTACAGTGACACCTCGAGATCGTCGCTCGGAAACGTTTCGCTCTC
TAGTCGTGACAGAAACTTCTCCACCATGGCTGGCGCTGAAGAGTTGGTTA
AGGGAAATGTTTATCCGAACGGCGTTGCGGTCATCACTCTTGATCGTCCC
AAAGCCCTCAACGCCATGAATTTAGATATGGATATCAAGTACAAGCAAAT
TCTTGAAGAATGGGAATCGGATCCGAAGGTCAAATGTGTTCTGATTGAGG
GCAGCTCACCGCGTGCCTTTTGTGCAGGTGGTGATGTGAAGCAGATTACA
TACAAAAACACACTCTCGGATATGATTGAGGTCTTCACTGCAGAGTATTC
TCTAATATGCAAAATTTCAGAGTACAAGAAGCCTTATATATCATTCATGG
ATGGCATAACAATGGGCTTTGGAATTGGCCTATCTGGCCATGGTCGCTAC
AGAGTGGTAACTGAGAGGACTGTTCTTGCTATGCCGGAAAATGGAATTGG
CCTGTTTCCGGATGTTGGATTTTCATATATAGCAGCACAAACTCCAGGAG
AGGGTTCTGTTGGTGCTTATCTTGGAATGACTGGGAAAAGGATATCAACA
CCTTCAGATGCGCTATTTGTGGGTCTTGGAACACACTATGTGCCATCTGG
GAATATAGGTTCACTGAAGGAGGCCCTTCTAGCCAGTACCTTTTCGGAGG
ATCCACACAAGGTTGTTACACCGCTGTTGGCAAAATACAGCAGTAACCCT
GAGTCTGAAGCTCAGTTGAAGTTGCTTTTGCCTCAGATAACATCATGCTT
CCGTTCAGATAAGTCAGTAAAGGAGATAATTGCAGAGCTTAAAAAACATC
AGCAGAGTACAGAAGCTTCAGTGGTAGAGTGGGCAAATGAGGCTTTGCAG
GGTCTTGGAAAGGCTGCACCCTTTTCTCTCTGCTTGACGCAAAAGTATTT
TTCTAGAGTTGCATCTGGATATGGTAAACATGGCAATGAATTCACAACGC
TAAAAGGTGTTATGAAAACTGAATATCGCATTGCCTTACGATCATCTCTG
CGAAATGATTTTGCTGAAGGTGTCCGGGCAGTCTTGGTTGACAAGGATCA
GAATCCAAAGTGGAATCCTCCAAGCTTGGATGAAGTTAATGAAAAGGAAG
TGGAAGCAGTTTTTGAGCCATTAAATCCAGGAATTGAGGAGTTGAAAGTG
TAA
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protein sequence of Tc09v2_p009840.2

>Tc09v2_p009840.2 ID=Tc09v2_p009840.2|Name=Tc09v2_p009840.2|organism=Theobroma cacao|type=polypeptide|length=451bp
MKCFSVVSVCKLATKSSSTFPLFLFPNNPATSAATATARFPSRAPRSLRF
PIYSDTSRSSLGNVSLSSRDRNFSTMAGAEELVKGNVYPNGVAVITLDRP
KALNAMNLDMDIKYKQILEEWESDPKVKCVLIEGSSPRAFCAGGDVKQIT
YKNTLSDMIEVFTAEYSLICKISEYKKPYISFMDGITMGFGIGLSGHGRY
RVVTERTVLAMPENGIGLFPDVGFSYIAAQTPGEGSVGAYLGMTGKRIST
PSDALFVGLGTHYVPSGNIGSLKEALLASTFSEDPHKVVTPLLAKYSSNP
ESEAQLKLLLPQITSCFRSDKSVKEIIAELKKHQQSTEASVVEWANEALQ
GLGKAAPFSLCLTQKYFSRVASGYGKHGNEFTTLKGVMKTEYRIALRSSL
RNDFAEGVRAVLVDKDQNPKWNPPSLDEVNEKEVEAVFEPLNPGIEELKV
*
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