Tc09v2_t009690.2

Overview
NameTc09v2_t009690.2
Unique NameTc09v2_t009690.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1245
Properties
Property NameValue
NoteAldehyde dehydrogenase family 2 member C4
Model evidenceSupporting evidence includes similarity to: 6 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Productaldehyde dehydrogenase family 2 member C4, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588624
GenbankXM_018127675.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g009690Tc09v2_g009690Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p009690.2Tc09v2_p009690.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto441811auto441811Theobroma cacaoexon
exon-auto441812auto441812Theobroma cacaoexon
exon-auto441813auto441813Theobroma cacaoexon
exon-auto441814auto441814Theobroma cacaoexon
exon-auto441815auto441815Theobroma cacaoexon
exon-auto441816auto441816Theobroma cacaoexon
exon-auto441817auto441817Theobroma cacaoexon
exon-auto441818auto441818Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto441819auto441819Theobroma cacaoCDS
CDS-auto441820auto441820Theobroma cacaoCDS
CDS-auto441821auto441821Theobroma cacaoCDS
CDS-auto441822auto441822Theobroma cacaoCDS
CDS-auto441823auto441823Theobroma cacaoCDS
CDS-auto441824auto441824Theobroma cacaoCDS
CDS-auto441825auto441825Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t009690.2 ID=Tc09v2_t009690.2|Name=Tc09v2_t009690.2|organism=Theobroma cacao|type=mRNA|length=1245bp
ATGATGAAGTTCGCAGACTTAATTGAAGAAAACATAGAAGAAATAGCTGC
GTTGGATACCATTAACGTGGGCAAGCTGTATGCTCATGGCAAGGTCTTGG
ATGTCCCAGGTGCAGCAAGGACTCTGCGTTACTTTGCAGGTGCAGCCGAT
AAAATTCATGGGACAGTTTTAAAATTGTCAAAGGGGCTTCAGGGCTACAC
TCTCAGGGAACCCATAGGAGTAGTCGGACATATAATTCCCTGGAATTTTC
CCACCGTTATGTTTTTCATGAAGGTTGCCCCCGCATTAGCCTCAGGTTGC
ACCATGGTTGTCAAGCCAGCTGAGCAGAGTCCTCTTTCAGCTCTTTACCA
TGCTCATCTTGCTAAGCTGGCTGGCATCCCTGACGGAGTGATCAATGTTG
TAAATGGATTTGGAGAGACTGCTGGAGCTGCCATTAGCGCTCATATGGAC
ATTGATAAAGTGAGTTTTACGGGGTCTACAGAAGTTGGACGTAAGATAAT
GGCAGCAGCAGCCGCAAGCAATCTGAAACCGGTGTCGTTAGAGTTGGGAG
GCAAATCTCCTCTATTAATATTTGATGATGCTGATATTAACGAGGCAGTA
AATATTGCTTTCGGTGGCATGTTTTTTAACAAAGGAGAAATCTGCGTGGC
AAGTTCTCGTGTTTATGTTCAAGAAGGTATATATGAAAAGTTTGTGAATA
AGTTGGTGGAGAAGGCGAAGTCATCAGTTGTCGGGGACCCTTTTGACCCT
CGAGTTCATCAAGGACCCCAGGTTGATAAGAAGCAATTCGAGAAAATTCT
CTCTTATGTTGAGCATGGCAAAAGAGAAGGAGCTACTTTGCTAACAGGGG
GTAAGCGTGTGGGCCAGAAGGGATACTACATCGAGCCCACGATATTTGCA
GATGTTAAGGATGACATGATCATAGCCAAGGAAGAAATTTTTGGACCTGT
AATGTCATTGATGAAGTTCAAAACCATGGAAGAGGCTATCAAGAGGGCAA
ATAACACAACTTATGGCCTGGCAGCTGGGATTATAACCAAGGACCTGAAC
GTGGCGAACACCGTCTCGAGATCGATCCGTGCCGGCATCATCTGGATCAA
TTGTTACATTGCGTTTGATGTGGATTGCCCCTACGGAGGATACAAGATGA
GCGGCTTCGGAAGGGATTATGGAGTGGAAGCCCTTAACCAGTATCACCAA
ATCAAGTCCGTTGTGACTCCCATTCACGATTCTCCCTGGCACTAA
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protein sequence of Tc09v2_p009690.2

>Tc09v2_p009690.2 ID=Tc09v2_p009690.2|Name=Tc09v2_p009690.2|organism=Theobroma cacao|type=polypeptide|length=415bp
MMKFADLIEENIEEIAALDTINVGKLYAHGKVLDVPGAARTLRYFAGAAD
KIHGTVLKLSKGLQGYTLREPIGVVGHIIPWNFPTVMFFMKVAPALASGC
TMVVKPAEQSPLSALYHAHLAKLAGIPDGVINVVNGFGETAGAAISAHMD
IDKVSFTGSTEVGRKIMAAAAASNLKPVSLELGGKSPLLIFDDADINEAV
NIAFGGMFFNKGEICVASSRVYVQEGIYEKFVNKLVEKAKSSVVGDPFDP
RVHQGPQVDKKQFEKILSYVEHGKREGATLLTGGKRVGQKGYYIEPTIFA
DVKDDMIIAKEEIFGPVMSLMKFKTMEEAIKRANNTTYGLAAGIITKDLN
VANTVSRSIRAGIIWINCYIAFDVDCPYGGYKMSGFGRDYGVEALNQYHQ
IKSVVTPIHDSPWH*
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