Tc09v2_t009650.1

Overview
NameTc09v2_t009650.1
Unique NameTc09v2_t009650.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length600
Properties
Property NameValue
NoteRas-related protein RHN1
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
Productras-related protein RHN1, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588613
GenbankXM_018128469.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g009650Tc09v2_g009650Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p009650.1Tc09v2_p009650.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto441446auto441446Theobroma cacaoexon
exon-auto441447auto441447Theobroma cacaoexon
exon-auto441448auto441448Theobroma cacaoexon
exon-auto441449auto441449Theobroma cacaoexon
exon-auto441450auto441450Theobroma cacaoexon
exon-auto441451auto441451Theobroma cacaoexon
exon-auto441452auto441452Theobroma cacaoexon
exon-auto441453auto441453Theobroma cacaoexon
exon-auto441454auto441454Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto441455auto441455Theobroma cacaoCDS
CDS-auto441456auto441456Theobroma cacaoCDS
CDS-auto441457auto441457Theobroma cacaoCDS
CDS-auto441458auto441458Theobroma cacaoCDS
CDS-auto441459auto441459Theobroma cacaoCDS
CDS-auto441460auto441460Theobroma cacaoCDS
CDS-auto441461auto441461Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t009650.1 ID=Tc09v2_t009650.1|Name=Tc09v2_t009650.1|organism=Theobroma cacao|type=mRNA|length=600bp
ATGGCGAGGACGAGCAACAAGAACATACAAGCCAAGCTGGTACTTCTTGG
GGACATGGGAACTGGGAAAACAAGCTTGGTATTGAGATTTGTCAAAGGGC
AATTTTTTGATTACCAGGAATCAACAATTGGAGCAGCCTTCTTCACTCAG
GTTCTGTCACTGAATGAAGCCACCATAAAGTTTGATATATGGGACACAGC
AGGACAGGAGAGATACCATAGCTTGGCTCCCATGTATTATCGTGGTGCAG
CTGCCGCTGTTGTGGTATATGATATCACAAGCTCGGATTCATTTGAGCGT
GCCAAAAAATGGATCCAGGAACTACAAAGACAAGGAAATCCAAACTTGAT
AATGTTCTTGGTAGCAAACAAGGTAGACTTGGAAGAAACGAGAAAAGTGG
GAAGTGAGGAAGGTGAGCAATGTGCCAAAGAAAATGGCTTGACTTTCTTT
GAAACATCAGCAAAGACTGCACAGAATGTCAACGAACTCTTTTATGAAAT
AGCAAAGAGAGTGGCAAAAGCTGCTCCTTCTCGGCCAACTGGAATGAAAC
TGCATAGCAGACCGCAAGAAAGTGGAAGAAGATTCTTCTGTTGCTCCTGA
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protein sequence of Tc09v2_p009650.1

>Tc09v2_p009650.1 ID=Tc09v2_p009650.1|Name=Tc09v2_p009650.1|organism=Theobroma cacao|type=polypeptide|length=200bp
MARTSNKNIQAKLVLLGDMGTGKTSLVLRFVKGQFFDYQESTIGAAFFTQ
VLSLNEATIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSSDSFER
AKKWIQELQRQGNPNLIMFLVANKVDLEETRKVGSEEGEQCAKENGLTFF
ETSAKTAQNVNELFYEIAKRVAKAAPSRPTGMKLHSRPQESGRRFFCCS*
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