Tc09v2_t009410.2

Overview
NameTc09v2_t009410.2
Unique NameTc09v2_t009410.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length990
Properties
Property NameValue
NoteChloroplast processing peptidase
Model evidenceSupporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Productchloroplast processing peptidase, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588588
GenbankXM_007013090.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g009410Tc09v2_g009410Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p009410.2Tc09v2_p009410.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto441034auto441034Theobroma cacaoexon
exon-auto441035auto441035Theobroma cacaoexon
exon-auto441036auto441036Theobroma cacaoexon
exon-auto441037auto441037Theobroma cacaoexon
exon-auto441038auto441038Theobroma cacaoexon
exon-auto441039auto441039Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto441040auto441040Theobroma cacaoCDS
CDS-auto441041auto441041Theobroma cacaoCDS
CDS-auto441042auto441042Theobroma cacaoCDS
CDS-auto441043auto441043Theobroma cacaoCDS
CDS-auto441044auto441044Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t009410.2 ID=Tc09v2_t009410.2|Name=Tc09v2_t009410.2|organism=Theobroma cacao|type=mRNA|length=990bp
ATGGTGATATCTCTACACTCCTTGCCTCCATTGCTTTCCTTTCAAAACCC
TAATCCCAATTCAACCTATTTCTCCAAACCCTTCAAAGACACTCATGTAA
CCTCAATTGCTTTCTTCAAACCCCTCAGAACTCCCAATCTCACAATCCTC
AATATCCACCAAACTTCAAAATCCCACTTTTTAAGCCATAGCAATCCCAC
GTTTCCCTTCAAAATCCCAAATTGTTTGGGATTCAAGATAGAAAATGCTA
CAACTTTAAGCCTCAGAAACCGATTTCAAAGACTTAGCTGTTATGGGGTT
AAAGGCTCCGGTGAGGAGACCAAAGTAGTGTTGGACTCCGGTGACGGCGG
AGAAGGTGGCGATGGTGGCGGAGATGGAGATGATGGGGAGGTAAAGAAGA
AATTGCCTGAATGGTTAAATATTACTTCGGATGATGCAAAAACAGTTTTG
GCTGCAGTGGCAATATCACTTGCTTTCCGGTCATTCGTTGCTGAGCCGAG
GTATATTCCTTCGTTGTCGATGTATCCTACGTTTGATGCTGGGGATCGAA
TTGTTGCTGAGAAGGTTTCATACTACTTTAGGAAGCCATGTGCTAATGAT
ATTGTCATTTTTAAAAGTCCACCAGTTCTTCAGGAAGTAGGATACACTGA
TGAAGATGTCTTCGTTAAACGAATAGTAGCTAAGGAAGGTGATATTGTGG
AGGTTCATAATGGTAAGCTTATTGTTAATGGGGTTGTTCGAGATGAAGAC
TTCATTAATGAAGCACCTTCTTATGAAATGACACCAGTTCGAGTACCGGA
GAACTCAGTCTTTGTGATGGGTGACAATCGTAATAATAGCTATGATTCCC
ACGTTTGGGGTCCCCTCCCTGCCAAGAATATCATAGGAAGATCAGTATTC
CGTTATTGGCCTCCAAAGAGGATAGGTGGCACAGTACTTGAGCGTGGCTG
TGCAGTTGCCAAGCAGGAGAGTGTGAAAGCTTCTGAATAG
back to top

protein sequence of Tc09v2_p009410.2

>Tc09v2_p009410.2 ID=Tc09v2_p009410.2|Name=Tc09v2_p009410.2|organism=Theobroma cacao|type=polypeptide|length=330bp
MVISLHSLPPLLSFQNPNPNSTYFSKPFKDTHVTSIAFFKPLRTPNLTIL
NIHQTSKSHFLSHSNPTFPFKIPNCLGFKIENATTLSLRNRFQRLSCYGV
KGSGEETKVVLDSGDGGEGGDGGGDGDDGEVKKKLPEWLNITSDDAKTVL
AAVAISLAFRSFVAEPRYIPSLSMYPTFDAGDRIVAEKVSYYFRKPCAND
IVIFKSPPVLQEVGYTDEDVFVKRIVAKEGDIVEVHNGKLIVNGVVRDED
FINEAPSYEMTPVRVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVF
RYWPPKRIGGTVLERGCAVAKQESVKASE*
back to top