Tc09v2_t009410.1

Overview
NameTc09v2_t009410.1
Unique NameTc09v2_t009410.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length903
Properties
Property NameValue
NoteChloroplast processing peptidase
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Productchloroplast processing peptidase, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588588
GenbankXM_007013092.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g009410Tc09v2_g009410Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p009410.1Tc09v2_p009410.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto441023auto441023Theobroma cacaoexon
exon-auto441024auto441024Theobroma cacaoexon
exon-auto441025auto441025Theobroma cacaoexon
exon-auto441026auto441026Theobroma cacaoexon
exon-auto441027auto441027Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto441028auto441028Theobroma cacaoCDS
CDS-auto441029auto441029Theobroma cacaoCDS
CDS-auto441030auto441030Theobroma cacaoCDS
CDS-auto441031auto441031Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t009410.1 ID=Tc09v2_t009410.1|Name=Tc09v2_t009410.1|organism=Theobroma cacao|type=mRNA|length=903bp
ATGGTGATATCTCTACACTCCTTGCCTCCATTGCTTTCCTTTCAAAACCC
TAATCCCAATTCAACCTATTTCTCCAAACCCTTCAAAGACACTCATGTAA
CCTCAATTGCTTTCTTCAAACCCCTCAGAACTCCCAATCTCACAATCCTC
AATATCCACCAAACTTCAAAATCCCACTTTTTAAGCCATAGCAATCCCAC
GTTTCCCTTCAAAATCCCAAATTGTTTGGGATTCAAGATAGAAAATGCTA
CAACTTTAAGCCTCAGAAACCGATTTCAAAGACTTAGCTGTTATGGGGTT
AAAGGCTCCGGTGAGGAGACCAAAGTAGTGTTGGACTCCGGTGACGGCGG
AGAAGGTGGCGATGGTGGCGGAGATGGAGATGATGGGGAGGTAAAGAAGA
AATTGCCTGAATGGTTAAATATTACTTCGGATGATGCAAAAACAGTTTTG
GCTGCAGTGGCAATATCACTTGCTTTCCGGTCATTCGTTGCTGAGCCGAG
GTATATTCCTTCGTTGTCGATGTATCCTACGTTTGATGCTGGGGATCGAA
TTGTTGCTGAGAAGGTTTCATACTACTTTAGGAAGCCATGTGCTAATGAT
ATTGTCATTTTTAAAAGTCCACCAGTTCTTCAGGAAGTAGGATACACTGA
TGAAGATGTCTTCGTTAAACGAATAGTAGCTAAGGAAGGTGATATTGTGG
AGCGAGTACCGGAGAACTCAGTCTTTGTGATGGGTGACAATCGTAATAAT
AGCTATGATTCCCACGTTTGGGGTCCCCTCCCTGCCAAGAATATCATAGG
AAGATCAGTATTCCGTTATTGGCCTCCAAAGAGGATAGGTGGCACAGTAC
TTGAGCGTGGCTGTGCAGTTGCCAAGCAGGAGAGTGTGAAAGCTTCTGAA
TAG
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protein sequence of Tc09v2_p009410.1

>Tc09v2_p009410.1 ID=Tc09v2_p009410.1|Name=Tc09v2_p009410.1|organism=Theobroma cacao|type=polypeptide|length=301bp
MVISLHSLPPLLSFQNPNPNSTYFSKPFKDTHVTSIAFFKPLRTPNLTIL
NIHQTSKSHFLSHSNPTFPFKIPNCLGFKIENATTLSLRNRFQRLSCYGV
KGSGEETKVVLDSGDGGEGGDGGGDGDDGEVKKKLPEWLNITSDDAKTVL
AAVAISLAFRSFVAEPRYIPSLSMYPTFDAGDRIVAEKVSYYFRKPCAND
IVIFKSPPVLQEVGYTDEDVFVKRIVAKEGDIVERVPENSVFVMGDNRNN
SYDSHVWGPLPAKNIIGRSVFRYWPPKRIGGTVLERGCAVAKQESVKASE
*
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