Tc09v2_t009160.1

Overview
NameTc09v2_t009160.1
Unique NameTc09v2_t009160.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length942
Properties
Property NameValue
NoteAuxin-responsive protein IAA27
Model evidenceSupporting evidence includes similarity to: 15 ESTs, 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productauxin-responsive protein IAA27, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588560
GenbankXM_007013045.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g009160Tc09v2_g009160Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p009160.1Tc09v2_p009160.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto440345auto440345Theobroma cacaoexon
exon-auto440346auto440346Theobroma cacaoexon
exon-auto440347auto440347Theobroma cacaoexon
exon-auto440348auto440348Theobroma cacaoexon
exon-auto440349auto440349Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto440350auto440350Theobroma cacaoCDS
CDS-auto440351auto440351Theobroma cacaoCDS
CDS-auto440352auto440352Theobroma cacaoCDS
CDS-auto440353auto440353Theobroma cacaoCDS
CDS-auto440354auto440354Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t009160.1 ID=Tc09v2_t009160.1|Name=Tc09v2_t009160.1|organism=Theobroma cacao|type=mRNA|length=942bp
ATGTCTAAGCCAATAGAGCACGATTACATAGGCTTGTCAGAGCAGCAGCT
TCCTTCAATGGAGAAAAGCTCTGATGCTGGTAATAAAAAGAATGGTTTAC
ACTTAAAAGCTACTGAGTTGAGACTCGGGTTACCTGGCTCCGAGTCACCA
GAGAGGGAGGATCATGACCATAAACTGCTTTCACTGAAGAGTTTTGTGTC
AGGGGCGAAAAGGGGTTTTTCTGATACACTCAACGGTGGCGGGAAATGGG
TTTTTGGTGGTGGGAATGGAGGTGGATCTGAAGGCTTGTTTTCTCCTAGA
AGTGGCAGTAGTAATGGAGGAAACGGTCTTTCCGGGTCGGATTCGGGTGT
GGGCGGTCCTGTTTTGAAGGATGAAGCCGCTCAGAAGCCCGTGGTGGGTC
AGGAGAAGAAGCCTCAGGTTGCCGGTGGTAGTGGCCATGGGAATGGGAAT
ATTGCTCCTGTTTCAAACAGGGCACAAGTGGTTGGATGGCCACCAATTCG
CTCTTTCCGGAAGAATACAATGGCTTCTCATCCTCCGAAGAATGATGATG
ATGCAGAAGCCAAGTTGGGATCAGGATGTCTGTATGTCAAAGTTAGTATG
GATGGTGCTCCATATCTGAGGAAAGTTGATCTCAAATTCTACGGCAGCTA
TAAAGAACTCTCCTCAGCACTTGAAAAGATGTTCAGCTGCTTTACAATTG
GTCAGTGTGGTTCTCATGGAGTTCCTAGCCGAGATGGGTTGAGTGAGAGT
CGATTAATTGATCTTCTGCATGGCTCCGAGTATGTACTCACATATGAAGA
TAAAGATGGTGACTGGATGCTCGTCGGTGATGTTCCCTGGGAGATGTTTA
CCGACTCTTGTAAGAGGTTGAGGATCATGAAGAGTTCAGAGGCCATCGGC
CTAGCCCCAAGGGCGATGGAGAAGTGCAAGAATCGTACCTAG
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protein sequence of Tc09v2_p009160.1

>Tc09v2_p009160.1 ID=Tc09v2_p009160.1|Name=Tc09v2_p009160.1|organism=Theobroma cacao|type=polypeptide|length=314bp
MSKPIEHDYIGLSEQQLPSMEKSSDAGNKKNGLHLKATELRLGLPGSESP
EREDHDHKLLSLKSFVSGAKRGFSDTLNGGGKWVFGGGNGGGSEGLFSPR
SGSSNGGNGLSGSDSGVGGPVLKDEAAQKPVVGQEKKPQVAGGSGHGNGN
IAPVSNRAQVVGWPPIRSFRKNTMASHPPKNDDDAEAKLGSGCLYVKVSM
DGAPYLRKVDLKFYGSYKELSSALEKMFSCFTIGQCGSHGVPSRDGLSES
RLIDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIG
LAPRAMEKCKNRT*
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