Tc09v2_t009070.1

Overview
NameTc09v2_t009070.1
Unique NameTc09v2_t009070.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1287
Properties
Property NameValue
NoteProtein CASEIN KINASE I-LIKE 3
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 73 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productprotein CASEIN KINASE I-LIKE 3, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588551
GenbankXM_007013033.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g009070Tc09v2_g009070Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p009070.1Tc09v2_p009070.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto440168auto440168Theobroma cacaoexon
exon-auto440169auto440169Theobroma cacaoexon
exon-auto440170auto440170Theobroma cacaoexon
exon-auto440171auto440171Theobroma cacaoexon
exon-auto440172auto440172Theobroma cacaoexon
exon-auto440173auto440173Theobroma cacaoexon
exon-auto440174auto440174Theobroma cacaoexon
exon-auto440175auto440175Theobroma cacaoexon
exon-auto440176auto440176Theobroma cacaoexon
exon-auto440177auto440177Theobroma cacaoexon
exon-auto440178auto440178Theobroma cacaoexon
exon-auto440179auto440179Theobroma cacaoexon
exon-auto440180auto440180Theobroma cacaoexon
exon-auto440181auto440181Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto440182auto440182Theobroma cacaoCDS
CDS-auto440183auto440183Theobroma cacaoCDS
CDS-auto440184auto440184Theobroma cacaoCDS
CDS-auto440185auto440185Theobroma cacaoCDS
CDS-auto440186auto440186Theobroma cacaoCDS
CDS-auto440187auto440187Theobroma cacaoCDS
CDS-auto440188auto440188Theobroma cacaoCDS
CDS-auto440189auto440189Theobroma cacaoCDS
CDS-auto440190auto440190Theobroma cacaoCDS
CDS-auto440191auto440191Theobroma cacaoCDS
CDS-auto440192auto440192Theobroma cacaoCDS
CDS-auto440193auto440193Theobroma cacaoCDS
CDS-auto440194auto440194Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t009070.1 ID=Tc09v2_t009070.1|Name=Tc09v2_t009070.1|organism=Theobroma cacao|type=mRNA|length=1287bp
ATGGAACGAATCGTCGGTGGCAAATATAAGCTCGGCCGTAAGATCGGCAG
TGGATCTTTCGGTGAAATTTTTCTTGCTACGCATATTGATACGTTCGAGA
TCGTCGCTGTTAAGATGGAGAACAATAAAACGAAGCATCCGCAACTGCTT
TACGAAGCAAAATTGTACAATATTCTTCAAGGAGGAAGTGGAATTCCAAG
CATAAAATGGTCAGGTGTTAATGGGGAAGATAATGTACTTGTTCTCGATT
TACTCGGACCTAGTCTCGAGGATCTCTTTGTGTACTGTGGCAGGAAGTTT
TCGCTGAAAACTGTCTTAATGTTGGCTGATCAAATGATTACAAGAATCGA
ATATGTTCACGCCAAGGGATTTCTTCATAGAGACATAAAGCCTGATAACT
TCCTAATGGGACTTGGTCGCAAAGCAAATCAGGTTTATATAATTGATTTT
GGCCTTGCCAAAAGATACCGAGACTCCACAACTAATCGCCATATTCCTTA
CAGAGAAAACAAAAATTTAACGGGGACTGCTCGTTATGCAAGTTGCAATA
CTCATCTTGGAATAGAGCAAAGTCGGCGGGATGATTTGGAGTCACTTGGC
TATGTGCTTTTATATTTTCTCAGAGGAAGTCTTCCATGGCAAGGTTTGAA
AGCTGCCACAAAGAAGCAGAAATATGATAAAATATGTGAGAAGAAGTTGT
CCACTCCTATTGAGGTTCTATGCAAGTCTCATCCTGTGGAGTTTGCATCA
TACTTTCATTATTGCCATTCTTTGACATTTGATCAACGTCCTGATTATGG
GTTCCTGAAGCGTTTGTTCCGTGATTTATTTCTTCGTGAAGGTTATGAGC
TTGACTACATATTTGACTGGACAATCATCAAGTACCAGCAGGCCCAGAAA
ACTAGATCTCAGCCTCGATTGTCTCCAGTTACTGGAGGTAGCAGCAGTCA
TCCATTACCTGTGGATGTGGATCATCATCAAGGCTTCAATGCCACTTATT
CGACTGACGTCACAGAGCGCATTAGATCAAGTAATGTTTCTGGTCCAGGT
GTTCGCATGCAATTTAAATCAGCAACAGGGAAGAACTTGATTTCTGATGC
TACAGTTGACAAAAATATTTTTGACTCTCATACACCCTCATCATCGTTTG
CACCTGCTGGCACCTCAAAAAGAAATGGTCAGAAATTGCCCACTGAAGCT
GCCAATTCTGGCCATGGAAATGGAAACAAAATCGGACCTTCCAGTAGTTG
GATTTCATCATTGCAGCGCATTTCGTCTGCCAAATGA
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protein sequence of Tc09v2_p009070.1

>Tc09v2_p009070.1 ID=Tc09v2_p009070.1|Name=Tc09v2_p009070.1|organism=Theobroma cacao|type=polypeptide|length=429bp
MERIVGGKYKLGRKIGSGSFGEIFLATHIDTFEIVAVKMENNKTKHPQLL
YEAKLYNILQGGSGIPSIKWSGVNGEDNVLVLDLLGPSLEDLFVYCGRKF
SLKTVLMLADQMITRIEYVHAKGFLHRDIKPDNFLMGLGRKANQVYIIDF
GLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLG
YVLLYFLRGSLPWQGLKAATKKQKYDKICEKKLSTPIEVLCKSHPVEFAS
YFHYCHSLTFDQRPDYGFLKRLFRDLFLREGYELDYIFDWTIIKYQQAQK
TRSQPRLSPVTGGSSSHPLPVDVDHHQGFNATYSTDVTERIRSSNVSGPG
VRMQFKSATGKNLISDATVDKNIFDSHTPSSSFAPAGTSKRNGQKLPTEA
ANSGHGNGNKIGPSSSWISSLQRISSAK*
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