Tc09v2_t008580.1

Overview
NameTc09v2_t008580.1
Unique NameTc09v2_t008580.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1947
Properties
Property NameValue
NoteArginine--tRNA ligase, chloroplastic/mitochondrial
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
Productarginine--tRNA ligase, cytoplasmic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588494
GenbankXM_007012937.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g008580Tc09v2_g008580Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p008580.1Tc09v2_p008580.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto439174auto439174Theobroma cacaoexon
exon-auto439175auto439175Theobroma cacaoexon
exon-auto439176auto439176Theobroma cacaoexon
exon-auto439177auto439177Theobroma cacaoexon
exon-auto439178auto439178Theobroma cacaoexon
exon-auto439179auto439179Theobroma cacaoexon
exon-auto439180auto439180Theobroma cacaoexon
exon-auto439181auto439181Theobroma cacaoexon
exon-auto439182auto439182Theobroma cacaoexon
exon-auto439183auto439183Theobroma cacaoexon
exon-auto439184auto439184Theobroma cacaoexon
exon-auto439185auto439185Theobroma cacaoexon
exon-auto439186auto439186Theobroma cacaoexon
exon-auto439187auto439187Theobroma cacaoexon
exon-auto439188auto439188Theobroma cacaoexon
exon-auto439189auto439189Theobroma cacaoexon
exon-auto439190auto439190Theobroma cacaoexon
exon-auto439191auto439191Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto439192auto439192Theobroma cacaoCDS
CDS-auto439193auto439193Theobroma cacaoCDS
CDS-auto439194auto439194Theobroma cacaoCDS
CDS-auto439195auto439195Theobroma cacaoCDS
CDS-auto439196auto439196Theobroma cacaoCDS
CDS-auto439197auto439197Theobroma cacaoCDS
CDS-auto439198auto439198Theobroma cacaoCDS
CDS-auto439199auto439199Theobroma cacaoCDS
CDS-auto439200auto439200Theobroma cacaoCDS
CDS-auto439201auto439201Theobroma cacaoCDS
CDS-auto439202auto439202Theobroma cacaoCDS
CDS-auto439203auto439203Theobroma cacaoCDS
CDS-auto439204auto439204Theobroma cacaoCDS
CDS-auto439205auto439205Theobroma cacaoCDS
CDS-auto439206auto439206Theobroma cacaoCDS
CDS-auto439207auto439207Theobroma cacaoCDS
CDS-auto439208auto439208Theobroma cacaoCDS
CDS-auto439209auto439209Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t008580.1 ID=Tc09v2_t008580.1|Name=Tc09v2_t008580.1|organism=Theobroma cacao|type=mRNA|length=1947bp
ATGCTGGCATCCTTAACCCTTTTAGTGCCGCCGGCATCGCCTTCTCAATT
TCTTTCCTTCAATCGCCTCTCTCATTTCCACTTCTCTCCTTCCATCACCG
TCTCTGATTTATTGAGAGTGACATCTAGAAGACTTGCTTGGGCAGCGAAG
ACGCAGTCAATAACGACAATGGCAACTGGAGAGGATGAATGTGTGGGCAA
TGTGAAGGTGCAGTTAGCAAAATTATTTGAAGCTTCGCTTAAAGTAACTG
TCCCTAATGAGCCAGATGTAGAGCCATTGGTAGCTGCCTGCACTGGGAAG
TTTGGAGATTACCAATGTAACAATGCCATGGGCCTGTGGTCTAAAATTAA
AGGGAAGGGTACTCAATTTCGTGGGCCTCCAGCAGTTGGAGAGGCTATCA
AGAATAATCTCCCAACCTCTGAAATGATAGAATCATGCTCCGTAGCTGGT
CCTGGATTTGTAAATGTGGTATTGTCAAAGAATTGGATGGCTAAGAGCAT
TCAAAAGATGCTAATTGAAGGTATTGATACATGGGCACCAATGCCACCCG
TCAAAAGGGCAGTTGTCGACTTTTCATCCCCTAATATAGCAAAAGAAATG
CACGTTGGTCACTTGAGGTCTACTATTATTGGTGACACACTTGCCCGCAT
GCTTGAATTTTCAAAAGTTGAAGTACTTCGGCGAAACCATGTTGGTGACT
GGGGGACACAGTTTGGCATGCTGATTGAGTTTCTGTTTGAAAAATTTCCA
AACTTTGAAGATGCTAATGAAACTGCCATTGGAGATCTACAGGCATTTTA
TAAAGCATCAAAGCAGAGATTTGATGCTGATCCTGCATTCAAGGAGAAAG
CCCAACAGGCAGTGGTGCGCCTTCAGGGTGGAGAAGACAAGTATCGTAGG
GCATGGGCACAGATATGTGAAATCAGCCGGAATGAATTTCATAAGGTCTA
TCAGCGGCTTGGAGTTCATCTAGAAGAAAAAGGGGAGAGCTTTTATAATC
CCTACATTCCTGAGGTTATAGAGGCATTGACCAAACAAGGATTAGTAGAG
GAAAGTCAGGGAGCTCGTGTGATCTTTATTGAAGGTGTTAATATACCTCT
TATTGTGGTGAAGAGTGACGGTGGTTTCAACTATGCATCAACTGATCTGG
CTGCTCTTTGGTATCGCCTCAATGAGGAGAAAGCTGCTTGGATAATATAT
GTAACAGATGTAGGCCAGCAGCAGCATTTTGATATGGTCTTCAAAGCTGC
CAAACGTGCAGGGTGGCTTCCACACGGTGATGGTTCATATCCCAAAACTA
GCCATGTTGGTTTTGGCCTTGTTCTTGGAGAAGATGGCAAGCGTTTTCGA
ACCCGTAACACTGAAGTAGTTCGATTAGTTGATCTACTTGATGAAGCCAA
GAGTCGAAGCAAAGCAGCACTTATTGAGCGTGGTAAGGGTGAAGAATGGA
CTGAGGAGGAGATTGAGAGTACTGCTGAGGCAGTTGGTTATGGTGCTGTA
AAGTATGCTGACTTGAAGAACAACAGATTGACCAATTACACATTTAATTT
TGACCAGATGCTTAACGATAAGGGCAACACTGCTGTTTATTTGCTGTATG
CTCATGCTCGAATCTGTTCAATCATCAGGAGATCTGGTAAAGACATTGAG
GAACTGAAGAATAAGGGGACAGTAGTATTGGGGCACAAGGATGAGCGTGA
TTTGGGGCTTCATTTGCTACAGTTTGTCGAGGTTGTTGAAGAGGCCTGTA
CCAATCTGTTACCAAATGTTTTGTGTGACTACCTCTATAATTTATCAGAA
ATCTTCTCGAAATTTTATAGCAACCCCGAGTGCAAGGTTATCGGGTCAGA
TATGGAAACGGGCCGACTATTGTTATGTGAAGCAACTGCTGTGGTCATGA
GAAAGTGTTTCAATCTCCTGGGAATCACACCAATTTACAAGATATAA
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protein sequence of Tc09v2_p008580.1

>Tc09v2_p008580.1 ID=Tc09v2_p008580.1|Name=Tc09v2_p008580.1|organism=Theobroma cacao|type=polypeptide|length=649bp
MLASLTLLVPPASPSQFLSFNRLSHFHFSPSITVSDLLRVTSRRLAWAAK
TQSITTMATGEDECVGNVKVQLAKLFEASLKVTVPNEPDVEPLVAACTGK
FGDYQCNNAMGLWSKIKGKGTQFRGPPAVGEAIKNNLPTSEMIESCSVAG
PGFVNVVLSKNWMAKSIQKMLIEGIDTWAPMPPVKRAVVDFSSPNIAKEM
HVGHLRSTIIGDTLARMLEFSKVEVLRRNHVGDWGTQFGMLIEFLFEKFP
NFEDANETAIGDLQAFYKASKQRFDADPAFKEKAQQAVVRLQGGEDKYRR
AWAQICEISRNEFHKVYQRLGVHLEEKGESFYNPYIPEVIEALTKQGLVE
ESQGARVIFIEGVNIPLIVVKSDGGFNYASTDLAALWYRLNEEKAAWIIY
VTDVGQQQHFDMVFKAAKRAGWLPHGDGSYPKTSHVGFGLVLGEDGKRFR
TRNTEVVRLVDLLDEAKSRSKAALIERGKGEEWTEEEIESTAEAVGYGAV
KYADLKNNRLTNYTFNFDQMLNDKGNTAVYLLYAHARICSIIRRSGKDIE
ELKNKGTVVLGHKDERDLGLHLLQFVEVVEEACTNLLPNVLCDYLYNLSE
IFSKFYSNPECKVIGSDMETGRLLLCEATAVVMRKCFNLLGITPIYKI*
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