Tc09v2_t008230.1

Overview
NameTc09v2_t008230.1
Unique NameTc09v2_t008230.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1710
Properties
Property NameValue
NoteAsparagine--tRNA ligase, cytoplasmic 1
Model evidenceSupporting evidence includes similarity to: 11 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productasparagine--tRNA ligase, cytoplasmic 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588454
GenbankXM_007012868.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g008230Tc09v2_g008230Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p008230.1Tc09v2_p008230.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto438482auto438482Theobroma cacaoexon
exon-auto438483auto438483Theobroma cacaoexon
exon-auto438484auto438484Theobroma cacaoexon
exon-auto438485auto438485Theobroma cacaoexon
exon-auto438486auto438486Theobroma cacaoexon
exon-auto438487auto438487Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto438488auto438488Theobroma cacaoCDS
CDS-auto438489auto438489Theobroma cacaoCDS
CDS-auto438490auto438490Theobroma cacaoCDS
CDS-auto438491auto438491Theobroma cacaoCDS
CDS-auto438492auto438492Theobroma cacaoCDS
CDS-auto438493auto438493Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t008230.1 ID=Tc09v2_t008230.1|Name=Tc09v2_t008230.1|organism=Theobroma cacao|type=mRNA|length=1710bp
ATGGTGGAAAGAGATCAGGCGGCGCCGCCTGCTGACCAACTTGCCGCGAT
GGACTTGACCGACGCCGTTCAGAACCACGCATTCTCTGACCGCGTCCTGA
TCCGGTCCATCGTTGGCCGGCCCGACGGAGGGGCTGGCCTTGCGGGGCAA
CGAGTCCGGGCCGCTGGTTGGGTGAGGACGGGGAGAGAGCAAGGGAAAGG
AACGTTCGCGTTCTTGGAACTGAACGACGGGTCTTGTCCGGCGAACTTGC
AGGTGATTGTGGACGCCGGCGTGGCTGTTCTGAGCAAGCTGGTGGCGACC
GGCACGTGCGTGGTGGTTGATGGAATATTGAAGGTGCCGCCTGAAGGCAC
GAGGCAGAGGATTGAGCTTCGGGTCGAAAAAGTGGTTCATATAGGCGAGG
TGGATCCTGCTAAGTACCCGATACCAAAAACGAAGCTCACGCTTGAATTT
TTGAGGGATCATCTTCATCTTCGATCTAGGACCAACACGATTGCTGCAAT
TGCTCGAATTCGGAATGCACTTGCTTTTGCCACTCACTCTTTCTTCCAAG
AACATCATTTCCTTTATGTGCATACTCCAATTTTAACCACTAGTGATTGT
GAGGGTGCTGGTGAAATGTTTCAAGTTACAACTTTGATTAGTGAAGCTGA
AAAGTTGGAGAAGGAGCTGATTAAAAATCCTCCTCCATCAGAAGCAGATA
TAGAAGCAGCTAGGCAACTTGTGAGTGAGAGGGGGGAGGCTGTTAAACAA
CTGAAAGCTGCTAAAGCAAGCAAGGCGGATATTGCTGCTTCTGTGGCTGA
ACTTAATAAAGCGAAGGAGAGTCTCTCAAAGCTGGAGGAGAGATCTAAAC
TGAAACCTGGGATCCCCCAAAAGGATGGCAAGATTGACTATACTCAAGAT
TTCTTTGCTCGCCAAGCCTTTTTGACAGTTTCTGGCCAACTACAGGTTGA
AACTTATGCATGTGCTGTTAGTAACGTGTATACCTTTGGGCCAACTTTCC
GTGCTGAACACTCTCACACTTCAAGGCATTTGGCCGAGTTTTGGATGGTG
GAGCCTGAAATAGCATTTGCAGATCTTCAGGATGACATGAGCTGTGCTGA
GGCATATGTGAAGTATATGTGTAAATGGTTGCTTGAGAAATGCCTTGATG
ATATGGAATTCATGGCTAAAAATTATGATAAAGGTTGCATTGACCGGCTG
AGAATGGTTGCGTCAACTCCTTTTGTACGTATATCATACACAGAAGCAGT
GGAGCTGTTAGAGGAAGCTGTGAGAGGTGGTAAGAAATTTGAAAATGAGG
TGGAGTGGGGGATTGATTTAGCATCTGAGCATGAAAGATACTTGACAGAG
GTTAAATTTCAGAAGCCTGTTATTGTTTATAACTACCCAAAGGGAATTAA
AGCGTTCTACATGAGGCTCAATGATGACTTAAAAACAGTTGCTGCTATGG
ATGTCCTTGTGCCCAAGGTTGGAGAATTAATTGGGGGAAGCCAAAGGGAA
GAGCGTTATGATGTTATCCGGGAAAGAATTACAGAGATGGGGCTGCCTCT
TGAGCCATATGAGTGGTATCTTGACCTGCGGCGCTATGGAACTGTTAAAC
ATTGTGGATTTGGTTTAGGCTTTGAACGAATGATTCTCTTTGCCACTGGC
ATCGACAACATTAGAGATGTTATTCCCTTCCCGCGATATCCAGGGAGGGC
TGATCTTTGA
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protein sequence of Tc09v2_p008230.1

>Tc09v2_p008230.1 ID=Tc09v2_p008230.1|Name=Tc09v2_p008230.1|organism=Theobroma cacao|type=polypeptide|length=570bp
MVERDQAAPPADQLAAMDLTDAVQNHAFSDRVLIRSIVGRPDGGAGLAGQ
RVRAAGWVRTGREQGKGTFAFLELNDGSCPANLQVIVDAGVAVLSKLVAT
GTCVVVDGILKVPPEGTRQRIELRVEKVVHIGEVDPAKYPIPKTKLTLEF
LRDHLHLRSRTNTIAAIARIRNALAFATHSFFQEHHFLYVHTPILTTSDC
EGAGEMFQVTTLISEAEKLEKELIKNPPPSEADIEAARQLVSERGEAVKQ
LKAAKASKADIAASVAELNKAKESLSKLEERSKLKPGIPQKDGKIDYTQD
FFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMV
EPEIAFADLQDDMSCAEAYVKYMCKWLLEKCLDDMEFMAKNYDKGCIDRL
RMVASTPFVRISYTEAVELLEEAVRGGKKFENEVEWGIDLASEHERYLTE
VKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQRE
ERYDVIRERITEMGLPLEPYEWYLDLRRYGTVKHCGFGLGFERMILFATG
IDNIRDVIPFPRYPGRADL*
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