Tc09v2_t007260.2

Overview
NameTc09v2_t007260.2
Unique NameTc09v2_t007260.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length660
Properties
Property NameValue
NotePre-mRNA cleavage factor Im 25 kDa subunit 1
Productpre-mRNA cleavage factor Im 25 kDa subunit 1, transcript variant X1
Model evidenceSupporting evidence includes similarity to: 1 EST, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588339
GenbankXM_007012672.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g007260Tc09v2_g007260Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p007260.2Tc09v2_p007260.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto435678auto435678Theobroma cacaoexon
exon-auto435679auto435679Theobroma cacaoexon
exon-auto435680auto435680Theobroma cacaoexon
exon-auto435681auto435681Theobroma cacaoexon
exon-auto435682auto435682Theobroma cacaoexon
exon-auto435683auto435683Theobroma cacaoexon
exon-auto435684auto435684Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto435685auto435685Theobroma cacaoCDS
CDS-auto435686auto435686Theobroma cacaoCDS
CDS-auto435687auto435687Theobroma cacaoCDS
CDS-auto435688auto435688Theobroma cacaoCDS
CDS-auto435689auto435689Theobroma cacaoCDS
CDS-auto435690auto435690Theobroma cacaoCDS
CDS-auto435691auto435691Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t007260.2 ID=Tc09v2_t007260.2|Name=Tc09v2_t007260.2|organism=Theobroma cacao|type=mRNA|length=660bp
ATGGGAGATGACACGGGAGCAGCAGCAGCAGCAACAGTAAACGATCATAG
TAGCAGCGGTGATCATAGAAAAGAGGTGGATATTTACCCTCTAAGTTGTT
ACTATTTTGGATCCAAAGAAACCATCGTTTTCAAGGATGAAACTCTGTCC
GATCGTATTAAAAGGATGAAATCCAATTATGCTGCTTATGGACTGAGGAC
TTCTGTTGAAGCAGTTATTCTGGTTGAGTTGTTCAAACACCCTCATCTGT
TGCTGCTGCAAGTTAGAAATTCCATCTTTAAGCTTCCTGGTGGTCGTTTG
AGGCCAGGTGAATCAGATATTGATGGACTGAGGCGTAAGCTTTCCAGGAA
GCTTTCTGCCAGTGAAGATGACAGTGAAACTGAATGGGAGGTGGGAGAAT
GTCTTGGCATGTGGTGGCGGCATGATTTCGAAACGTTATTGTATCCTTAC
TTGCCACCCAACGTGAAAAAGCCTAAGGAGTGCACCAAACTCTTCCTTGT
AAGGTTGCCAGAGAGCCGAAAATTTATTGTACCCAAAAAGCTGAAATTGC
TTGCAGTTCCACTGTGTCAGGTTCACGAAAATCACAAGACATACGGACCG
ATAATATCAGGAGTGCCACAGTTGCTATCTAAATTCTCCATCAACATCAT
TGACCCTTAG
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protein sequence of Tc09v2_p007260.2

>Tc09v2_p007260.2 ID=Tc09v2_p007260.2|Name=Tc09v2_p007260.2|organism=Theobroma cacao|type=polypeptide|length=220bp
MGDDTGAAAAATVNDHSSSGDHRKEVDIYPLSCYYFGSKETIVFKDETLS
DRIKRMKSNYAAYGLRTSVEAVILVELFKHPHLLLLQVRNSIFKLPGGRL
RPGESDIDGLRRKLSRKLSASEDDSETEWEVGECLGMWWRHDFETLLYPY
LPPNVKKPKECTKLFLVRLPESRKFIVPKKLKLLAVPLCQVHENHKTYGP
IISGVPQLLSKFSINIIDP*
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