Tc09v2_t006940.1

Overview
NameTc09v2_t006940.1
Unique NameTc09v2_t006940.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length885
Properties
Property NameValue
NoteDNA-directed RNA polymerase III subunit RPC4, putative
Model evidenceSupporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
Productuncharacterized LOC18588303
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588303
GenbankXM_007012614.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g006940Tc09v2_g006940Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p006940.1Tc09v2_p006940.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto435087auto435087Theobroma cacaoexon
exon-auto435088auto435088Theobroma cacaoexon
exon-auto435089auto435089Theobroma cacaoexon
exon-auto435090auto435090Theobroma cacaoexon
exon-auto435091auto435091Theobroma cacaoexon
exon-auto435092auto435092Theobroma cacaoexon
exon-auto435093auto435093Theobroma cacaoexon
exon-auto435094auto435094Theobroma cacaoexon
exon-auto435095auto435095Theobroma cacaoexon
exon-auto435096auto435096Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto435097auto435097Theobroma cacaoCDS
CDS-auto435098auto435098Theobroma cacaoCDS
CDS-auto435099auto435099Theobroma cacaoCDS
CDS-auto435100auto435100Theobroma cacaoCDS
CDS-auto435101auto435101Theobroma cacaoCDS
CDS-auto435102auto435102Theobroma cacaoCDS
CDS-auto435103auto435103Theobroma cacaoCDS
CDS-auto435104auto435104Theobroma cacaoCDS
CDS-auto435105auto435105Theobroma cacaoCDS
CDS-auto435106auto435106Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t006940.1 ID=Tc09v2_t006940.1|Name=Tc09v2_t006940.1|organism=Theobroma cacao|type=mRNA|length=885bp
ATGGAACAAAAAGACAACAAAACCAACGCCCCCAGGAAGATGAGATTTGC
ACCTAAAGCCCCACCTCGCCAAGCACCAAAGCTCGAGGTTAAAACGGAAG
TGGTTGAGGACACTGATGCTGTTCAGGCGAGGGATTTGCTGCAGCGTTTA
AATCAAACATCGGCAAAGACAAAGCCTAAAGTTGAAAAGAAAGTTGCTTC
TTCACAGGTTGCATTCGGTCATGGAGGAGCATCAGCTTCAATGAAATTAT
TTGGTGTTTCCAAAGGTGCAAGTCGTACTAGCAGAGAAACTCTCAATGGT
GTTGTCCACACTCCAGGCTTGAGAGAGGAGAAAGAATACAGAGAACCATG
GGATTATTATAGTTATTATCCTGTAACCCTTCCTATGAGGAGACCATATT
CAGGAAATCCAGAGTTTCTTGATGAGGAGGAGTTTGCTTCAGAGAATATA
ACTTTTGATGAAAATTTAGTGGAGCCAGCAGTGGAGCTTGGTCTAATGGA
CGAGAATTTGGAGCCAAGTATGTTCTTTCTTCAGTTACCACCAACTCTAC
CTATGATAAAGCAATCAGGAACAACAGCTGGGCTTGAGGTCGATAGCAGC
TCAAAGCCAGCTGCACGTGTAGGTTCAGTAAAGAAGACATGTGGCTTAGA
AGAGTTACCTGCAGGTCTCATGGGTAAAATGCTAGTGCATAAAAGTGGAG
CTGTCAAGTTGAAGTTAGGGGATACCCTTTATGATGTTACTCCAGGTTTG
AATTGCGTATTTGCCCAGGATGTTGTAGCTGTTAATACTGCAGAAAAGCA
GTGTTGTGTTGTTGGGGAGCTTGATAAGCGTGCTGTTTTAACCCCAGATG
TTGATTCTGTTCTGAATAGTATGGCTGATCTTTGA
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protein sequence of Tc09v2_p006940.1

>Tc09v2_p006940.1 ID=Tc09v2_p006940.1|Name=Tc09v2_p006940.1|organism=Theobroma cacao|type=polypeptide|length=295bp
MEQKDNKTNAPRKMRFAPKAPPRQAPKLEVKTEVVEDTDAVQARDLLQRL
NQTSAKTKPKVEKKVASSQVAFGHGGASASMKLFGVSKGASRTSRETLNG
VVHTPGLREEKEYREPWDYYSYYPVTLPMRRPYSGNPEFLDEEEFASENI
TFDENLVEPAVELGLMDENLEPSMFFLQLPPTLPMIKQSGTTAGLEVDSS
SKPAARVGSVKKTCGLEELPAGLMGKMLVHKSGAVKLKLGDTLYDVTPGL
NCVFAQDVVAVNTAEKQCCVVGELDKRAVLTPDVDSVLNSMADL*
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