Tc09v2_t006280.1

Overview
NameTc09v2_t006280.1
Unique NameTc09v2_t006280.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2811
Properties
Property NameValue
NoteRespiratory burst oxidase homolog protein E
Model evidenceSupporting evidence includes similarity to: 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Productrespiratory burst oxidase homolog protein E
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588228
GenbankXM_018128331.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g006280Tc09v2_g006280Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p006280.1Tc09v2_p006280.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto433708auto433708Theobroma cacaoexon
exon-auto433709auto433709Theobroma cacaoexon
exon-auto433710auto433710Theobroma cacaoexon
exon-auto433711auto433711Theobroma cacaoexon
exon-auto433712auto433712Theobroma cacaoexon
exon-auto433713auto433713Theobroma cacaoexon
exon-auto433714auto433714Theobroma cacaoexon
exon-auto433715auto433715Theobroma cacaoexon
exon-auto433716auto433716Theobroma cacaoexon
exon-auto433717auto433717Theobroma cacaoexon
exon-auto433718auto433718Theobroma cacaoexon
exon-auto433719auto433719Theobroma cacaoexon
exon-auto433720auto433720Theobroma cacaoexon
exon-auto433721auto433721Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto433722auto433722Theobroma cacaoCDS
CDS-auto433723auto433723Theobroma cacaoCDS
CDS-auto433724auto433724Theobroma cacaoCDS
CDS-auto433725auto433725Theobroma cacaoCDS
CDS-auto433726auto433726Theobroma cacaoCDS
CDS-auto433727auto433727Theobroma cacaoCDS
CDS-auto433728auto433728Theobroma cacaoCDS
CDS-auto433729auto433729Theobroma cacaoCDS
CDS-auto433730auto433730Theobroma cacaoCDS
CDS-auto433731auto433731Theobroma cacaoCDS
CDS-auto433732auto433732Theobroma cacaoCDS
CDS-auto433733auto433733Theobroma cacaoCDS
CDS-auto433734auto433734Theobroma cacaoCDS
CDS-auto433735auto433735Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t006280.1 ID=Tc09v2_t006280.1|Name=Tc09v2_t006280.1|organism=Theobroma cacao|type=mRNA|length=2811bp
ATGAAGTCGCCGGCGTCGTTTCACTCGTTTGGAAGGAGCAGTTCGAAGCT
TTCAAATTACAGCCGTTCATTTGACTTACCGGATGACCTCGAAGATCTTT
CTGCAGATGACTACGGCGTTGGTGGAGCAATGTTGCCGATTTTTCTAAGC
GATTTGCAGAGGAATAACCAGCAAGACCTCGTCGAAGTCACGCTCGAGCT
CGAGAACGACTCCATTGTGTTTTGCAGCGTGACGCCGAGTACTCCGCCGA
TTACGGACCAGAAGGAACCCTCCAGCGTAACGGCTTCTTCCGGGGTTTTA
GGGAGGAGTCTTTCGGCGACGTCGAGGATTCGGAGGAAGTTCGCGTGGTT
AAAGTCGGGGTCATCATCGAGAGCTTCATCATCGGCGGAGAATGATCAGG
ACCGTAGGATTACGGCGCGTGACGAGAGGAGAATCAAGGCTAAGCTTCAA
CGGACGAAATCGAGTGCTCAACGTGCGTTGAGAGGGCTCAGGTTTATTAG
TAAAACGACCGGTGCAAATGACGCTGAAGAAATGTGGAGACGGGTCGAGT
CCAGGTTCGAGTCGTTGGCTAAGGACGGGTTGCTTGCTAGAGAAGATTTC
GGTGATTGCATAGGGATGGTGGATTCGAAGGAGTTCGCGGTTGGGATATT
CGATGCGTTAGCAAGAAGAAGGAGACAGAGAATGGGGAAAATAACAAAGG
AAGAGCTTCATGATTTCTGGTTACAGATTTCAGACCAGAGTTTTGACGCG
CGTCTTCAGATTTTCTTTGACATGGCTGACAGCAACGAGGATGGAAGAGT
CACAAGGGAAGAAGTACAGGAGCTTATAATGCTTAGTGCTTCAGCCAACA
AGCTATCCAAGCTGAAAGAACAAGCTGAAGAATATGCCTCACTGATCATG
GAAGAATTGGATCCAGAGAATTTCGGGTACATTGAGTTATGGCAGTTGGA
AACGTTACTTCTACAAAGAGACAATTATATGAACAACAGTAGGCCACTTA
GCACAACTAGTGTTGCCTGGAGTCAGAACATTAGTTCCGCCAGGCCCAAA
AACATGTTCCGAAGAGTGTGCTTTGCACTCCGGTGCTTGATGCTAGAAAA
CTGGAGAAGGGGATGGATTTTGTTGCTTTGGATGATGGCAATGGCTACGC
TTTTTGCCTGGAAATTCATGCAATATAAAAACAGGGCAGCATTCCAAGTT
ATGGGATATTGCTTGTGCACTGCCAAAGGAGCTGCCGAGACTCTCAAGCT
CAACTTGGCTCTAATTCTTCTGCCAGTTTGTCGAAACACTTTGACTTGGC
TTCGGTCCACTAAAGCAAGGTCCTTTGTTCCTTTTGATGACAACATAAAT
TTCCACAAGATAATTGCCTGTGCTATAGCCATTGGAGTCTTAGTTCATGC
AGGAAGCCACTTGTCATGCGATTTTATCCGCCTCACGCGCTCTTCTCCAG
AAAAATTTGCTCTCATAGCCTCTGACTTCAGTCATGGCAAAAGACCGACA
TATTTAGAGCTTTTGACTGGTGTTCTGGGCGTGACGGGGATTTCTATGGT
GATTTTCATGGCCATTGCGTTTATATTAGCAACAAGTCACTTCCGCAGAA
ATGTATTGAGACTCCCTGCACCATTCAACAGATTGACAGGCTTCAATGCA
TTCTGGTATTCTCATCATCTTCTTGGTCTTGTCTACGTTTTGCTAGTGAT
CCATGGAACATTCTTGTTCTTGGCCCACAAGTGGTATCAGAGATCGACAT
GGATGTACATCTCTGCTCCATTGTTGCTTTACATGGGGGAGCGTAGTGTA
AGAACGTGTAGATCAGAACATTATTCAGTAAAAATATTTAAGGTTTCGGT
ACTACCAGGAAATGTCTTCAGCATGGTCATGTCAAAACCACCGGGATTCA
AGTATAAAAGTGGGCAGTACATATTCCTACAGTGCCCATCAATCTCCCCA
TTTGAATGGCACCCATTTTCTATTACTTCAGCACCAGGAGATGAGTGTCT
TAGCGTTCACATCCGGACGGTAGGAGACTGGACGCAAGAATTGAAACGAG
TTTTCACTGATGTTAATGACTCACCATTTGTTATAGGTCGAGCTAGATTT
GGTCAGCCTGGACATATTGATCAGAATGGCCAACCAAAGTTGCTTGTTGA
TGGTCCATATGGGGCTCCGGCACAGGACTACAGGAATTATGATGTTTTGC
TCCTTGCGGGGCTAGGAATTGGAGCCACCCCTTTTATAAGCATCCTTAGA
GATCTTTTAAACAATTCAAGAGCAGAAGATCAAGTGAGTTCCACCACAGA
AATGACTAGATCAGACGACAGCTGGAACAGTCTTGCATCTTCGAATTTCA
CAGCTAAATCAAGCTCGACTAACGGTGGAAAGAAGAAGCCACAGAGGACT
AGGAATGCTTATTTCTACTGGGTCACCAGGGAACCCGGCTCCTTTGAATG
GTTTAAAGGAGTAATGGATGAAGTTGCAGAAATGGATCACAAAGGCCAGA
TTGAGCTGCACAACTACCTTACAAGTGTCTACGAAGAAGGGGATGCAAGA
TCAACCTTGATTACGATGGTCCAAGCTCTAAACCATGCTAAACATGGGGT
TGACATCCTATCAGGAACCCGAGTGAGGACACATTTCGCAAGGCCTAACT
GGAAAGAAGTTTTCAGCAAAATAGCTTCAAAACATCCTCATGCCACAGTA
GGAGTGTTCTATTGTGGAATGCCGGTGTTGGCAAAGGAGTTGAAGAAGCT
ATCACGAGAGCTGAGTCACAAGACATCCACGCGGTTCGAATTCCACAAGG
AATATTTCTAA
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protein sequence of Tc09v2_p006280.1

>Tc09v2_p006280.1 ID=Tc09v2_p006280.1|Name=Tc09v2_p006280.1|organism=Theobroma cacao|type=polypeptide|length=937bp
MKSPASFHSFGRSSSKLSNYSRSFDLPDDLEDLSADDYGVGGAMLPIFLS
DLQRNNQQDLVEVTLELENDSIVFCSVTPSTPPITDQKEPSSVTASSGVL
GRSLSATSRIRRKFAWLKSGSSSRASSSAENDQDRRITARDERRIKAKLQ
RTKSSAQRALRGLRFISKTTGANDAEEMWRRVESRFESLAKDGLLAREDF
GDCIGMVDSKEFAVGIFDALARRRRQRMGKITKEELHDFWLQISDQSFDA
RLQIFFDMADSNEDGRVTREEVQELIMLSASANKLSKLKEQAEEYASLIM
EELDPENFGYIELWQLETLLLQRDNYMNNSRPLSTTSVAWSQNISSARPK
NMFRRVCFALRCLMLENWRRGWILLLWMMAMATLFAWKFMQYKNRAAFQV
MGYCLCTAKGAAETLKLNLALILLPVCRNTLTWLRSTKARSFVPFDDNIN
FHKIIACAIAIGVLVHAGSHLSCDFIRLTRSSPEKFALIASDFSHGKRPT
YLELLTGVLGVTGISMVIFMAIAFILATSHFRRNVLRLPAPFNRLTGFNA
FWYSHHLLGLVYVLLVIHGTFLFLAHKWYQRSTWMYISAPLLLYMGERSV
RTCRSEHYSVKIFKVSVLPGNVFSMVMSKPPGFKYKSGQYIFLQCPSISP
FEWHPFSITSAPGDECLSVHIRTVGDWTQELKRVFTDVNDSPFVIGRARF
GQPGHIDQNGQPKLLVDGPYGAPAQDYRNYDVLLLAGLGIGATPFISILR
DLLNNSRAEDQVSSTTEMTRSDDSWNSLASSNFTAKSSSTNGGKKKPQRT
RNAYFYWVTREPGSFEWFKGVMDEVAEMDHKGQIELHNYLTSVYEEGDAR
STLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSKIASKHPHATV
GVFYCGMPVLAKELKKLSRELSHKTSTRFEFHKEYF*
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