Tc09v2_t005990.1

Overview
NameTc09v2_t005990.1
Unique NameTc09v2_t005990.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1626
Properties
Property NameValue
NotePectinesterase/pectinesterase inhibitor PPE8B
Model evidenceSupporting evidence includes similarity to: 9 ESTs, 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productpectinesterase/pectinesterase inhibitor PPE8B
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588200
GenbankXM_007012442.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g005990Tc09v2_g005990Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p005990.1Tc09v2_p005990.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto432989auto432989Theobroma cacaoexon
exon-auto432990auto432990Theobroma cacaoexon
exon-auto432991auto432991Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto432992auto432992Theobroma cacaoCDS
CDS-auto432993auto432993Theobroma cacaoCDS
CDS-auto432994auto432994Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t005990.1 ID=Tc09v2_t005990.1|Name=Tc09v2_t005990.1|organism=Theobroma cacao|type=mRNA|length=1626bp
ATGTTACCCAAAAACATGCCAAATTTCTCCTCACATTCATTGTTGGTCTT
GTTGGTTGCTCTTTATTTGTGCTGTACCTCATATGCAACCTCCAGTAGTG
ATGATTTTCTGGGAGCTGAGTGCTTAAATGTGCCTGTAGCCGAGTTTGTA
GGCTCTCTAAGAACCACCATTGATGCTGTAAGAAAAGTGACCTCCATCGT
CTCTCAGCTTGGAGGCTTTTTTGGTGATTTTCGACTTTCTAATGCCATCT
CTGATTGCCTTGATCTGCTGGACTTTTCTGCTGATGAGTTGAGCTGGACT
CTGTCTGCTTCCCAGAATCCTAAGGCTAAAAATAACAGCACTGGTGATCT
AAGTTCCAATTTGAGGACATGGCTGAGTGCTGCAATGGCTAATCAGGCGA
CATGCATTGATGGGTTTGAGGGTACAAGTAGCGTGATCAAACCTGTAGTG
GCAGGGAGCCTTAATCAAGTCACGTCGCTGGTCAGTGACCTTCTCACCAT
GGTGCACCCCGGTCCCAGTTCAAAATCGAATGGAGGTACCAGCAATGGTG
GTAGCAAAGAAGGAGGAGGAGCCGCTGCTGGTGGTCATCCGGGCCAGAAA
CTAGCAAATAACAAGAACCAATTTCCATCATGGGTGAAAAGGGAGGACAG
AAAATTGTTAGAGGTAAACGGGGTATCAGCTGATGTTGTGGTTGCAGCAG
ATGGGACTGGAAACTTTACTAGCATAATGGATGCAGTTGCTGCAGTACCC
GACTACAGCATGAGCAGATATGTTATTTACATTAAGAAGGGTTTATATAA
AGAGAATGTAGAAATTAAGAAGAAGAAATGGAACCTTATGATGGTTGGTG
ATGGAATGGACGTTACAGTAATATCTGGAAATCGAAGCTTCATTGATGGT
TGGACCACGTTTCGATCAGCAACTTTTGCTGTAAGCGGAAGAGGATTCAT
AGCAAGAGACATAACATTTGAGAACACAGCAGGGCCCCAGAAACACCAAG
CAGTGGCATTGCGATCCGACTCTGACCTGTCAGTTTTCTTCCGATGTGCT
ATTAGGGGCTACCAAGATTCGCTCTATACTCACACAATGCGCCAATTTTT
CCGGGAATGTAAGATCACTGGCACTGTGGATTTCATTTTTGGTGATGCAA
CTGTGGTCTTCCAGTACTGTCAAATCCTAGCCAAGCAAGGTCTACCAAAC
CAGAAAAACACGGTCACAGCGCAAGGCCGGAAAGACCCGAACCAACCTAC
AGGCTTCTCTATTCAATTCTGCAATATCTCAGCTGATACAGATTTGTTAC
CTTTTGTTAACTCCACTGCTACATACCTTGGGAGACCCTGGAAGCTGTAT
TCAAGAACTATTATCATGCAATCCTACATTAGTAATGCTATAAGGCCAGA
AGGGTGGCTTGAGTGGAATCAAGATTTTGCTTTGGACACATTGTACTATG
CAGAGTTCATGAATTTTGGGCCAGGGGCTGGTCTTGGTAGCAGAGTTAAC
TGGCCTGGCTACCATGCCTTAAATAACTCTGAACAAGCTGCTAATTTTAC
GGTGGCTCAATTCATTGAAGGAAACTTGTGGTTACCGTCAACTGGCGTTA
AATACACAGCAGGATTGGCGGTATAA
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protein sequence of Tc09v2_p005990.1

>Tc09v2_p005990.1 ID=Tc09v2_p005990.1|Name=Tc09v2_p005990.1|organism=Theobroma cacao|type=polypeptide|length=542bp
MLPKNMPNFSSHSLLVLLVALYLCCTSYATSSSDDFLGAECLNVPVAEFV
GSLRTTIDAVRKVTSIVSQLGGFFGDFRLSNAISDCLDLLDFSADELSWT
LSASQNPKAKNNSTGDLSSNLRTWLSAAMANQATCIDGFEGTSSVIKPVV
AGSLNQVTSLVSDLLTMVHPGPSSKSNGGTSNGGSKEGGGAAAGGHPGQK
LANNKNQFPSWVKREDRKLLEVNGVSADVVVAADGTGNFTSIMDAVAAVP
DYSMSRYVIYIKKGLYKENVEIKKKKWNLMMVGDGMDVTVISGNRSFIDG
WTTFRSATFAVSGRGFIARDITFENTAGPQKHQAVALRSDSDLSVFFRCA
IRGYQDSLYTHTMRQFFRECKITGTVDFIFGDATVVFQYCQILAKQGLPN
QKNTVTAQGRKDPNQPTGFSIQFCNISADTDLLPFVNSTATYLGRPWKLY
SRTIIMQSYISNAIRPEGWLEWNQDFALDTLYYAEFMNFGPGAGLGSRVN
WPGYHALNNSEQAANFTVAQFIEGNLWLPSTGVKYTAGLAV*
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