Tc09v2_t005960.5

Overview
NameTc09v2_t005960.5
Unique NameTc09v2_t005960.5
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1518
Properties
Property NameValue
NoteAlpha-aminoadipic semialdehyde synthase
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Productalpha-aminoadipic semialdehyde synthase, transcript variant X5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588195
GenbankXM_018127280.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g005960Tc09v2_g005960Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p005960.5Tc09v2_p005960.5Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto432905auto432905Theobroma cacaoexon
exon-auto432906auto432906Theobroma cacaoexon
exon-auto432907auto432907Theobroma cacaoexon
exon-auto432908auto432908Theobroma cacaoexon
exon-auto432909auto432909Theobroma cacaoexon
exon-auto432910auto432910Theobroma cacaoexon
exon-auto432911auto432911Theobroma cacaoexon
exon-auto432912auto432912Theobroma cacaoexon
exon-auto432913auto432913Theobroma cacaoexon
exon-auto432914auto432914Theobroma cacaoexon
exon-auto432915auto432915Theobroma cacaoexon
exon-auto432916auto432916Theobroma cacaoexon
exon-auto432917auto432917Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto432918auto432918Theobroma cacaoCDS
CDS-auto432919auto432919Theobroma cacaoCDS
CDS-auto432920auto432920Theobroma cacaoCDS
CDS-auto432921auto432921Theobroma cacaoCDS
CDS-auto432922auto432922Theobroma cacaoCDS
CDS-auto432923auto432923Theobroma cacaoCDS
CDS-auto432924auto432924Theobroma cacaoCDS
CDS-auto432925auto432925Theobroma cacaoCDS
CDS-auto432926auto432926Theobroma cacaoCDS
CDS-auto432927auto432927Theobroma cacaoCDS
CDS-auto432928auto432928Theobroma cacaoCDS
CDS-auto432929auto432929Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t005960.5 ID=Tc09v2_t005960.5|Name=Tc09v2_t005960.5|organism=Theobroma cacao|type=mRNA|length=1518bp
ATGAATAAGATTTTCCTGAAGGTTGGTAAGCTCCAGGAGACTGGGGTCAA
GAAGGAGTTCGACACAAAAAAGAGGACATCAGTTCTTATCCTTGGTGCAG
GCCGGGTCTGTCAACCAGCTGCTGAGCTGTTGGCATCAATTGGAAGCAGC
TCATCCCGCCAATGGTATAAAGCATGCCTCGAAACTGATTTTGAAGAGCA
GCACGATGTCCATGTTATTGTTGCATCTCTCTACCTTAAGGATGCAGAAG
AGATAATTCAAGGTATTCCAAATGCAACGGCAGTTGAGCTTGATGTGACA
GATCATAGAACTCTCTGCGAGTATATTTCGCAGGTTGAGGTCGTTGTGAG
TTTGTTGCCTTCTAGTTGCCACGTTGTTGTGGCAAATGTGTGCATTGAGC
TTAAGAAACATCTGGTCACTGCAAGTTATGTTGACAATTCCATGTCAATG
CTGGATGAGAAGGCCAAGAGTGCAGGTATTACAATTCTTGGTGAAATGGG
CTTGGACCCTGGAATCGATCATATGATGGCAATGAAGATGATCAACCAAG
CGCATGTCAGAAAGGGAAAAATAAAATCTTTCACTTCATACTGTGGAGGG
CTCCCATCACCAGCAGCTGCAAATAATCCATTAGCATATAAATTCAGTTG
GAACCCTGCAGGAGCTATACGAGCTGGGAGAAATCCTGCAACCTACAAAT
CTCAAGATGAAACTGTACATGTAAACGGGGATGACCTCTACGATTCAGCC
GTAAGATTCCGCATACCTGAGCTTCCAGCTTTTGCATTGGAGTGTCTTCC
TAACCGTAACTCATTAACATATGGGGAGATGTATGGAATAGGACATGAAG
CATCGACCATATTCCGTGGAACTCTCCGCTATGAAGGTTTTAGTGAGATA
ATGGGGACACTAGTGAGAATTGGTCTATTCGATGCCGAAGCTCATCCACT
TCTTGAACATGGAAGTCGACCCACATTTAGAGCTTTCCTCTGTGAACTTC
TAGAGATTAATACTGAAGCTATGGGTGAAGCTCTAGTTGGAGAGAAGGAG
ATAACTGAAAGGATTGTAAAGCTCGGACACTGCAAGGAGCGAAGAACAGC
AATACAGGCTGCCAAAACTATAATGTTTTTGGGACTACACGAGCAGACAG
AAATTCCTGTTTCCTGCCAAAGTGCGTTTGCTGTAACCTGTCATCGAATG
GAAGAAAGGCTAGCGTATTCTAGCACAGAACAGGATATGGTTTTGTTGCA
TCATGAAGTGGAAGTAGATTACCCGGCTAGCCAACAAACAGAGCACCATA
CGGCCACTTTATTGGAATTTGGGAAGGCTAAGAATGGGAAAATGATCTCT
GCTATGGCTCTTACTGTCGGTGTTCCTGTCGCAGTTGGAGCTCTGCTTTT
ACTTGTAAACAAGATCACAACACGAGGTGTTTTGAGGCCTATCGATCCTG
AAGTTTACGTACCAGCTTTGGATATCCTTCAAGCCTATGGCATCAAATTG
ACGGAGAAAACCGAGTGA
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protein sequence of Tc09v2_p005960.5

>Tc09v2_p005960.5 ID=Tc09v2_p005960.5|Name=Tc09v2_p005960.5|organism=Theobroma cacao|type=polypeptide|length=506bp
MNKIFLKVGKLQETGVKKEFDTKKRTSVLILGAGRVCQPAAELLASIGSS
SSRQWYKACLETDFEEQHDVHVIVASLYLKDAEEIIQGIPNATAVELDVT
DHRTLCEYISQVEVVVSLLPSSCHVVVANVCIELKKHLVTASYVDNSMSM
LDEKAKSAGITILGEMGLDPGIDHMMAMKMINQAHVRKGKIKSFTSYCGG
LPSPAAANNPLAYKFSWNPAGAIRAGRNPATYKSQDETVHVNGDDLYDSA
VRFRIPELPAFALECLPNRNSLTYGEMYGIGHEASTIFRGTLRYEGFSEI
MGTLVRIGLFDAEAHPLLEHGSRPTFRAFLCELLEINTEAMGEALVGEKE
ITERIVKLGHCKERRTAIQAAKTIMFLGLHEQTEIPVSCQSAFAVTCHRM
EERLAYSSTEQDMVLLHHEVEVDYPASQQTEHHTATLLEFGKAKNGKMIS
AMALTVGVPVAVGALLLLVNKITTRGVLRPIDPEVYVPALDILQAYGIKL
TEKTE*
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