Tc09v2_t005960.2

Overview
NameTc09v2_t005960.2
Unique NameTc09v2_t005960.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2943
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
Productalpha-aminoadipic semialdehyde synthase, transcript variant X2
NoteAlpha-aminoadipic semialdehyde synthase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588195
GenbankXM_018127277.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g005960Tc09v2_g005960Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p005960.2Tc09v2_p005960.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto432790auto432790Theobroma cacaoexon
exon-auto432791auto432791Theobroma cacaoexon
exon-auto432792auto432792Theobroma cacaoexon
exon-auto432793auto432793Theobroma cacaoexon
exon-auto432794auto432794Theobroma cacaoexon
exon-auto432795auto432795Theobroma cacaoexon
exon-auto432796auto432796Theobroma cacaoexon
exon-auto432797auto432797Theobroma cacaoexon
exon-auto432798auto432798Theobroma cacaoexon
exon-auto432799auto432799Theobroma cacaoexon
exon-auto432800auto432800Theobroma cacaoexon
exon-auto432801auto432801Theobroma cacaoexon
exon-auto432802auto432802Theobroma cacaoexon
exon-auto432803auto432803Theobroma cacaoexon
exon-auto432804auto432804Theobroma cacaoexon
exon-auto432805auto432805Theobroma cacaoexon
exon-auto432806auto432806Theobroma cacaoexon
exon-auto432807auto432807Theobroma cacaoexon
exon-auto432808auto432808Theobroma cacaoexon
exon-auto432809auto432809Theobroma cacaoexon
exon-auto432810auto432810Theobroma cacaoexon
exon-auto432811auto432811Theobroma cacaoexon
exon-auto432812auto432812Theobroma cacaoexon
exon-auto432813auto432813Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto432814auto432814Theobroma cacaoCDS
CDS-auto432815auto432815Theobroma cacaoCDS
CDS-auto432816auto432816Theobroma cacaoCDS
CDS-auto432817auto432817Theobroma cacaoCDS
CDS-auto432818auto432818Theobroma cacaoCDS
CDS-auto432819auto432819Theobroma cacaoCDS
CDS-auto432820auto432820Theobroma cacaoCDS
CDS-auto432821auto432821Theobroma cacaoCDS
CDS-auto432822auto432822Theobroma cacaoCDS
CDS-auto432823auto432823Theobroma cacaoCDS
CDS-auto432824auto432824Theobroma cacaoCDS
CDS-auto432825auto432825Theobroma cacaoCDS
CDS-auto432826auto432826Theobroma cacaoCDS
CDS-auto432827auto432827Theobroma cacaoCDS
CDS-auto432828auto432828Theobroma cacaoCDS
CDS-auto432829auto432829Theobroma cacaoCDS
CDS-auto432830auto432830Theobroma cacaoCDS
CDS-auto432831auto432831Theobroma cacaoCDS
CDS-auto432832auto432832Theobroma cacaoCDS
CDS-auto432833auto432833Theobroma cacaoCDS
CDS-auto432834auto432834Theobroma cacaoCDS
CDS-auto432835auto432835Theobroma cacaoCDS
CDS-auto432836auto432836Theobroma cacaoCDS
CDS-auto432837auto432837Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t005960.2 ID=Tc09v2_t005960.2|Name=Tc09v2_t005960.2|organism=Theobroma cacao|type=mRNA|length=2943bp
ATGCGGTCTTATTTTGGGCATCAAGCAACCAAAGACATGATTCTTCCTGA
TAGAGCTTATGCCTTCTTCTCACATACTCACAAAGCCCAGAAAGAAAACA
TGCCTTTGTTATATAAGATCCTGGCGGAGAGGGCGTCATTGTATGACTAT
GAGCTTATTGTTGGGGGCCATGGTAAAAGGTTACTTGCATTTGGCAAATA
TGCTGGCAGAGCAGGAATTATTGATTTCTTATGCGGATTGGGACAGAGGT
ATCTAAGTCTTGGATATTCAACACCTTTCCTCTCTCTTGGTTCATCTTAT
ATGTATCCTTCCTTGGCTGCTGCAAAGGCTGCAGTGATTTCTGTGGGTGA
AGAGATAGCATCTCAGGGACTGCCATCAGGAATCTGTCCTCTAGTCTTTG
TATTCACCGGTTCTGGAAATGTTGCTCTTGGTGCACAAGAGATATTTAAG
CTTCTTCCTCATAGTTTTGTTGAACCAAGCAGACTTCCAGAACTCTTTGG
GAAGGGAAGGAATCTCAATTCACCTGTACGAACATCAAAGAGGGTCTTTC
AAGTTTATGGTTGTGTTGTAACTAGTCGGGACATGGTTGAGTACAAAGAT
CCTTCAAAAACATTTGATAAAGCAGATTATTATGCTCATCCAGAACACTA
CAACCCTGTTTTCCACGAAAAAATAGCCCCATATGCAACAGCAGTTGTCA
ATTGCATGTATTGGGAGAAGAGATTTCCTCGGTTGTTGAGTACCCAGCAG
GTTCAAGATCTCATGAGGAAAGGTTGTCCACTTGTTGGAATCTCTGATAT
AACTTGTGATATAGGGGGCTCAATAGAGTTTGTTAACCAAACCACATCAA
TTGATTTACCTTTCTTCAGATATGATCCCTTAACTGATTCCTACCATCAT
GACATAGAGGGTAACGGAATAATATGTTCAGCTGTTGACATTCTTCCAAC
TGAGTTTGCAAAAGAGGCTTCTCAACACTTTGGAGACATTCTATCCCAAC
TTGTTGGTGGTTTAGCTTCTACAACAGACATTACTAAGTTACCTGCACAC
CTGAAGAGAGCTTGCATAGCTCATAGGGGAGCACTTACCTCCTTATACGA
ATATATCCCTCGTATGAGAAATTCAGACACAGAAGATATATCATATAATC
TTGCAAATGGCCAGTCCAACAAGAAATACAGTGTATTGGTATCTCTGAGT
GGCCACTTATTTGATCAGTTCCTGATAAATGAGGCTTTGGATATAATTGA
AGCTGCAGGTGGCTCCTTCCACTTGGTTAAGTGCCAAGTGGGCCAGAGTA
CAAGTGCCATGTCGTACTCAGAACTTGAGGTTGGTGCAGATGATAGGGAC
GTTCTGGATCAGATTATTGATTCTTTAACTTCTATTGCTAACCCAAGTGA
AAATCATGGGATCGTAAGTCAAGAAATGAATAAGATTTTCCTGAAGGTTG
GTAAGCTCCAGGAGACTGGGGTCAAGAAGGAGTTCGACACAAAAAAGAGG
ACATCAGTTCTTATCCTTGGTGCAGGCCGGGTCTGTCAACCAGCTGCTGA
GCTGTTGGCATCAATTGGAAGCAGCTCATCCCGCCAATGGTATAAAGCAT
GCCTCGAAACTGATTTTGAAGAGCAGCACGATGTCCATGTTATTGTTGCA
TCTCTCTACCTTAAGGATGCAGAAGAGATAATTCAAGGTATTCCAAATGC
AACGGCAGTTGAGCTTGATGTGACAGATCATAGAACTCTCTGCGAGTATA
TTTCGCAGGTTGAGGTCGTTGTGAGTTTGTTGCCTTCTAGTTGCCACGTT
GTTGTGGCAAATGTGTGCATTGAGCTTAAGAAACATCTGGTCACTGCAAG
TTATGTTGACAATTCCATGTCAATGCTGGATGAGAAGGCCAAGAGTGCAG
GTATTACAATTCTTGGTGAAATGGGCTTGGACCCTGGAATCGATCATATG
ATGGCAATGAAGATGATCAACCAAGCGCATGTCAGAAAGGGAAAAATAAA
ATCTTTCACTTCATACTGTGGAGGGCTCCCATCACCAGCAGCTGCAAATA
ATCCATTAGCATATAAATTCAGTTGGAACCCTGCAGGAGCTATACGAGCT
GGGAGAAATCCTGCAACCTACAAATCTCAAGATGAAACTGTACATGTAAA
CGGGGATGACCTCTACGATTCAGCCGTAAGATTCCGCATACCTGAGCTTC
CAGCTTTTGCATTGGAGTGTCTTCCTAACCGTAACTCATTAACATATGGG
GAGATGTATGGAATAGGACATGAAGCATCGACCATATTCCGTGGAACTCT
CCGCTATGAAGGTTTTAGTGAGATAATGGGGACACTAGTGAGAATTGGTC
TATTCGATGCCGAAGCTCATCCACTTCTTGAACATGGAAGTCGACCCACA
TTTAGAGCTTTCCTCTGTGAACTTCTAGAGATTAATACTGAAGCTATGGG
TGAAGCTCTAGTTGGAGAGAAGGAGATAACTGAAAGGATTGTAAAGCTCG
GACACTGCAAGGAGCGAAGAACAGCAATACAGGCTGCCAAAACTATAATG
TTTTTGGGACTACACGAGCAGACAGAAATTCCTGTTTCCTGCCAAAGTGC
GTTTGCTGTAACCTGTCATCGAATGGAAGAAAGGCTAGCGTATTCTAGCA
CAGAACAGGATATGGTTTTGTTGCATCATGAAGTGGAAGTAGATTACCCG
GCTAGCCAACAAACAGAGCACCATACGGCCACTTTATTGGAATTTGGGAA
GGCTAAGAATGGGAAAATGATCTCTGCTATGGCTCTTACTGTCGGTGTTC
CTGTCGCAGTTGGAGCTCTGCTTTTACTTGTAAACAAGATCACAACACGA
GGTGTTTTGAGGCCTATCGATCCTGAAGTTTACGTACCAGCTTTGGATAT
CCTTCAAGCCTATGGCATCAAATTGACGGAGAAAACCGAGTGA
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protein sequence of Tc09v2_p005960.2

>Tc09v2_p005960.2 ID=Tc09v2_p005960.2|Name=Tc09v2_p005960.2|organism=Theobroma cacao|type=polypeptide|length=981bp
MRSYFGHQATKDMILPDRAYAFFSHTHKAQKENMPLLYKILAERASLYDY
ELIVGGHGKRLLAFGKYAGRAGIIDFLCGLGQRYLSLGYSTPFLSLGSSY
MYPSLAAAKAAVISVGEEIASQGLPSGICPLVFVFTGSGNVALGAQEIFK
LLPHSFVEPSRLPELFGKGRNLNSPVRTSKRVFQVYGCVVTSRDMVEYKD
PSKTFDKADYYAHPEHYNPVFHEKIAPYATAVVNCMYWEKRFPRLLSTQQ
VQDLMRKGCPLVGISDITCDIGGSIEFVNQTTSIDLPFFRYDPLTDSYHH
DIEGNGIICSAVDILPTEFAKEASQHFGDILSQLVGGLASTTDITKLPAH
LKRACIAHRGALTSLYEYIPRMRNSDTEDISYNLANGQSNKKYSVLVSLS
GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQSTSAMSYSELEVGADDRD
VLDQIIDSLTSIANPSENHGIVSQEMNKIFLKVGKLQETGVKKEFDTKKR
TSVLILGAGRVCQPAAELLASIGSSSSRQWYKACLETDFEEQHDVHVIVA
SLYLKDAEEIIQGIPNATAVELDVTDHRTLCEYISQVEVVVSLLPSSCHV
VVANVCIELKKHLVTASYVDNSMSMLDEKAKSAGITILGEMGLDPGIDHM
MAMKMINQAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWNPAGAIRA
GRNPATYKSQDETVHVNGDDLYDSAVRFRIPELPAFALECLPNRNSLTYG
EMYGIGHEASTIFRGTLRYEGFSEIMGTLVRIGLFDAEAHPLLEHGSRPT
FRAFLCELLEINTEAMGEALVGEKEITERIVKLGHCKERRTAIQAAKTIM
FLGLHEQTEIPVSCQSAFAVTCHRMEERLAYSSTEQDMVLLHHEVEVDYP
ASQQTEHHTATLLEFGKAKNGKMISAMALTVGVPVAVGALLLLVNKITTR
GVLRPIDPEVYVPALDILQAYGIKLTEKTE*
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