Tc09v2_t005960.1

Overview
NameTc09v2_t005960.1
Unique NameTc09v2_t005960.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3162
Properties
Property NameValue
NoteAlpha-aminoadipic semialdehyde synthase
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Productalpha-aminoadipic semialdehyde synthase, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588195
GenbankXM_007012437.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g005960Tc09v2_g005960Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p005960.1Tc09v2_p005960.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto432738auto432738Theobroma cacaoexon
exon-auto432739auto432739Theobroma cacaoexon
exon-auto432740auto432740Theobroma cacaoexon
exon-auto432741auto432741Theobroma cacaoexon
exon-auto432742auto432742Theobroma cacaoexon
exon-auto432743auto432743Theobroma cacaoexon
exon-auto432744auto432744Theobroma cacaoexon
exon-auto432745auto432745Theobroma cacaoexon
exon-auto432746auto432746Theobroma cacaoexon
exon-auto432747auto432747Theobroma cacaoexon
exon-auto432748auto432748Theobroma cacaoexon
exon-auto432749auto432749Theobroma cacaoexon
exon-auto432750auto432750Theobroma cacaoexon
exon-auto432751auto432751Theobroma cacaoexon
exon-auto432752auto432752Theobroma cacaoexon
exon-auto432753auto432753Theobroma cacaoexon
exon-auto432754auto432754Theobroma cacaoexon
exon-auto432755auto432755Theobroma cacaoexon
exon-auto432756auto432756Theobroma cacaoexon
exon-auto432757auto432757Theobroma cacaoexon
exon-auto432758auto432758Theobroma cacaoexon
exon-auto432759auto432759Theobroma cacaoexon
exon-auto432760auto432760Theobroma cacaoexon
exon-auto432761auto432761Theobroma cacaoexon
exon-auto432762auto432762Theobroma cacaoexon
exon-auto432763auto432763Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto432764auto432764Theobroma cacaoCDS
CDS-auto432765auto432765Theobroma cacaoCDS
CDS-auto432766auto432766Theobroma cacaoCDS
CDS-auto432767auto432767Theobroma cacaoCDS
CDS-auto432768auto432768Theobroma cacaoCDS
CDS-auto432769auto432769Theobroma cacaoCDS
CDS-auto432770auto432770Theobroma cacaoCDS
CDS-auto432771auto432771Theobroma cacaoCDS
CDS-auto432772auto432772Theobroma cacaoCDS
CDS-auto432773auto432773Theobroma cacaoCDS
CDS-auto432774auto432774Theobroma cacaoCDS
CDS-auto432775auto432775Theobroma cacaoCDS
CDS-auto432776auto432776Theobroma cacaoCDS
CDS-auto432777auto432777Theobroma cacaoCDS
CDS-auto432778auto432778Theobroma cacaoCDS
CDS-auto432779auto432779Theobroma cacaoCDS
CDS-auto432780auto432780Theobroma cacaoCDS
CDS-auto432781auto432781Theobroma cacaoCDS
CDS-auto432782auto432782Theobroma cacaoCDS
CDS-auto432783auto432783Theobroma cacaoCDS
CDS-auto432784auto432784Theobroma cacaoCDS
CDS-auto432785auto432785Theobroma cacaoCDS
CDS-auto432786auto432786Theobroma cacaoCDS
CDS-auto432787auto432787Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t005960.1 ID=Tc09v2_t005960.1|Name=Tc09v2_t005960.1|organism=Theobroma cacao|type=mRNA|length=3162bp
ATGCTTGGCAATGGGGTGGTTGGGATCCTTTCTGAGTCTGTGAATAAATG
GGAAAGAAGAGTTCCTCTAACCCCATCACACTGTGCTCGACTTCTGCACA
GTGGGAGGGAAAAAACTGGAATAGCCCGTATAATCGTGCAGCCATCTACG
AAGCGCATCCATCACGATTCACTCTATGAAGATGTTGGTTGTGAGATATC
AGATGACTTGTCAGAATGCGGTCTTATTTTGGGCATCAAGCAACCAAAGC
TAGACATGATTCTTCCTGATAGAGCTTATGCCTTCTTCTCACATACTCAC
AAAGCCCAGAAAGAAAACATGCCTTTGTTATATAAGATCCTGGCGGAGAG
GGCGTCATTGTATGACTATGAGCTTATTGTTGGGGGCCATGGTAAAAGGT
TACTTGCATTTGGCAAATATGCTGGCAGAGCAGGAATTATTGATTTCTTA
TGCGGATTGGGACAGAGGTATCTAAGTCTTGGATATTCAACACCTTTCCT
CTCTCTTGGTTCATCTTATATGTATCCTTCCTTGGCTGCTGCAAAGGCTG
CAGTGATTTCTGTGGGTGAAGAGATAGCATCTCAGGGACTGCCATCAGGA
ATCTGTCCTCTAGTCTTTGTATTCACCGGTTCTGGAAATGTTGCTCTTGG
TGCACAAGAGATATTTAAGCTTCTTCCTCATAGTTTTGTTGAACCAAGCA
GACTTCCAGAACTCTTTGGGAAGGGAAGGAATCTCAATTCACCTGTACGA
ACATCAAAGAGGGTCTTTCAAGTTTATGGTTGTGTTGTAACTAGTCGGGA
CATGGTTGAGTACAAAGATCCTTCAAAAACATTTGATAAAGCAGATTATT
ATGCTCATCCAGAACACTACAACCCTGTTTTCCACGAAAAAATAGCCCCA
TATGCAACAGCAGTTGTCAATTGCATGTATTGGGAGAAGAGATTTCCTCG
GTTGTTGAGTACCCAGCAGGTTCAAGATCTCATGAGGAAAGGTTGTCCAC
TTGTTGGAATCTCTGATATAACTTGTGATATAGGGGGCTCAATAGAGTTT
GTTAACCAAACCACATCAATTGATTTACCTTTCTTCAGATATGATCCCTT
AACTGATTCCTACCATCATGACATAGAGGGTAACGGAATAATATGTTCAG
CTGTTGACATTCTTCCAACTGAGTTTGCAAAAGAGGCTTCTCAACACTTT
GGAGACATTCTATCCCAACTTGTTGGTGGTTTAGCTTCTACAACAGACAT
TACTAAGTTACCTGCACACCTGAAGAGAGCTTGCATAGCTCATAGGGGAG
CACTTACCTCCTTATACGAATATATCCCTCGTATGAGAAATTCAGACACA
GAAGATATATCATATAATCTTGCAAATGGCCAGTCCAACAAGAAATACAG
TGTATTGGTATCTCTGAGTGGCCACTTATTTGATCAGTTCCTGATAAATG
AGGCTTTGGATATAATTGAAGCTGCAGGTGGCTCCTTCCACTTGGTTAAG
TGCCAAGTGGGCCAGAGTACAAGTGCCATGTCGTACTCAGAACTTGAGGT
TGGTGCAGATGATAGGGACGTTCTGGATCAGATTATTGATTCTTTAACTT
CTATTGCTAACCCAAGTGAAAATCATGGGATCGTAAGTCAAGAAATGAAT
AAGATTTTCCTGAAGGTTGGTAAGCTCCAGGAGACTGGGGTCAAGAAGGA
GTTCGACACAAAAAAGAGGACATCAGTTCTTATCCTTGGTGCAGGCCGGG
TCTGTCAACCAGCTGCTGAGCTGTTGGCATCAATTGGAAGCAGCTCATCC
CGCCAATGGTATAAAGCATGCCTCGAAACTGATTTTGAAGAGCAGCACGA
TGTCCATGTTATTGTTGCATCTCTCTACCTTAAGGATGCAGAAGAGATAA
TTCAAGGTATTCCAAATGCAACGGCAGTTGAGCTTGATGTGACAGATCAT
AGAACTCTCTGCGAGTATATTTCGCAGGTTGAGGTCGTTGTGAGTTTGTT
GCCTTCTAGTTGCCACGTTGTTGTGGCAAATGTGTGCATTGAGCTTAAGA
AACATCTGGTCACTGCAAGTTATGTTGACAATTCCATGTCAATGCTGGAT
GAGAAGGCCAAGAGTGCAGGTATTACAATTCTTGGTGAAATGGGCTTGGA
CCCTGGAATCGATCATATGATGGCAATGAAGATGATCAACCAAGCGCATG
TCAGAAAGGGAAAAATAAAATCTTTCACTTCATACTGTGGAGGGCTCCCA
TCACCAGCAGCTGCAAATAATCCATTAGCATATAAATTCAGTTGGAACCC
TGCAGGAGCTATACGAGCTGGGAGAAATCCTGCAACCTACAAATCTCAAG
ATGAAACTGTACATGTAAACGGGGATGACCTCTACGATTCAGCCGTAAGA
TTCCGCATACCTGAGCTTCCAGCTTTTGCATTGGAGTGTCTTCCTAACCG
TAACTCATTAACATATGGGGAGATGTATGGAATAGGACATGAAGCATCGA
CCATATTCCGTGGAACTCTCCGCTATGAAGGTTTTAGTGAGATAATGGGG
ACACTAGTGAGAATTGGTCTATTCGATGCCGAAGCTCATCCACTTCTTGA
ACATGGAAGTCGACCCACATTTAGAGCTTTCCTCTGTGAACTTCTAGAGA
TTAATACTGAAGCTATGGGTGAAGCTCTAGTTGGAGAGAAGGAGATAACT
GAAAGGATTGTAAAGCTCGGACACTGCAAGGAGCGAAGAACAGCAATACA
GGCTGCCAAAACTATAATGTTTTTGGGACTACACGAGCAGACAGAAATTC
CTGTTTCCTGCCAAAGTGCGTTTGCTGTAACCTGTCATCGAATGGAAGAA
AGGCTAGCGTATTCTAGCACAGAACAGGATATGGTTTTGTTGCATCATGA
AGTGGAAGTAGATTACCCGGCTAGCCAACAAACAGAGCACCATACGGCCA
CTTTATTGGAATTTGGGAAGGCTAAGAATGGGAAAATGATCTCTGCTATG
GCTCTTACTGTCGGTGTTCCTGTCGCAGTTGGAGCTCTGCTTTTACTTGT
AAACAAGATCACAACACGAGGTGTTTTGAGGCCTATCGATCCTGAAGTTT
ACGTACCAGCTTTGGATATCCTTCAAGCCTATGGCATCAAATTGACGGAG
AAAACCGAGTGA
back to top

protein sequence of Tc09v2_p005960.1

>Tc09v2_p005960.1 ID=Tc09v2_p005960.1|Name=Tc09v2_p005960.1|organism=Theobroma cacao|type=polypeptide|length=1054bp
MLGNGVVGILSESVNKWERRVPLTPSHCARLLHSGREKTGIARIIVQPST
KRIHHDSLYEDVGCEISDDLSECGLILGIKQPKLDMILPDRAYAFFSHTH
KAQKENMPLLYKILAERASLYDYELIVGGHGKRLLAFGKYAGRAGIIDFL
CGLGQRYLSLGYSTPFLSLGSSYMYPSLAAAKAAVISVGEEIASQGLPSG
ICPLVFVFTGSGNVALGAQEIFKLLPHSFVEPSRLPELFGKGRNLNSPVR
TSKRVFQVYGCVVTSRDMVEYKDPSKTFDKADYYAHPEHYNPVFHEKIAP
YATAVVNCMYWEKRFPRLLSTQQVQDLMRKGCPLVGISDITCDIGGSIEF
VNQTTSIDLPFFRYDPLTDSYHHDIEGNGIICSAVDILPTEFAKEASQHF
GDILSQLVGGLASTTDITKLPAHLKRACIAHRGALTSLYEYIPRMRNSDT
EDISYNLANGQSNKKYSVLVSLSGHLFDQFLINEALDIIEAAGGSFHLVK
CQVGQSTSAMSYSELEVGADDRDVLDQIIDSLTSIANPSENHGIVSQEMN
KIFLKVGKLQETGVKKEFDTKKRTSVLILGAGRVCQPAAELLASIGSSSS
RQWYKACLETDFEEQHDVHVIVASLYLKDAEEIIQGIPNATAVELDVTDH
RTLCEYISQVEVVVSLLPSSCHVVVANVCIELKKHLVTASYVDNSMSMLD
EKAKSAGITILGEMGLDPGIDHMMAMKMINQAHVRKGKIKSFTSYCGGLP
SPAAANNPLAYKFSWNPAGAIRAGRNPATYKSQDETVHVNGDDLYDSAVR
FRIPELPAFALECLPNRNSLTYGEMYGIGHEASTIFRGTLRYEGFSEIMG
TLVRIGLFDAEAHPLLEHGSRPTFRAFLCELLEINTEAMGEALVGEKEIT
ERIVKLGHCKERRTAIQAAKTIMFLGLHEQTEIPVSCQSAFAVTCHRMEE
RLAYSSTEQDMVLLHHEVEVDYPASQQTEHHTATLLEFGKAKNGKMISAM
ALTVGVPVAVGALLLLVNKITTRGVLRPIDPEVYVPALDILQAYGIKLTE
KTE*
back to top