Tc09v2_t004480.2

Overview
NameTc09v2_t004480.2
Unique NameTc09v2_t004480.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1572
Properties
Property NameValue
NoteSerine hydroxymethyltransferase 3, chloroplastic
Model evidenceSupporting evidence includes similarity to: 8 ESTs, 53 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Productserine hydroxymethyltransferase 3, chloroplastic, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588037
GenbankXM_018127990.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g004480Tc09v2_g004480Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p004480.2Tc09v2_p004480.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto429616auto429616Theobroma cacaoexon
exon-auto429617auto429617Theobroma cacaoexon
exon-auto429618auto429618Theobroma cacaoexon
exon-auto429619auto429619Theobroma cacaoexon
exon-auto429620auto429620Theobroma cacaoexon
exon-auto429621auto429621Theobroma cacaoexon
exon-auto429622auto429622Theobroma cacaoexon
exon-auto429623auto429623Theobroma cacaoexon
exon-auto429624auto429624Theobroma cacaoexon
exon-auto429625auto429625Theobroma cacaoexon
exon-auto429626auto429626Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto429627auto429627Theobroma cacaoCDS
CDS-auto429628auto429628Theobroma cacaoCDS
CDS-auto429629auto429629Theobroma cacaoCDS
CDS-auto429630auto429630Theobroma cacaoCDS
CDS-auto429631auto429631Theobroma cacaoCDS
CDS-auto429632auto429632Theobroma cacaoCDS
CDS-auto429633auto429633Theobroma cacaoCDS
CDS-auto429634auto429634Theobroma cacaoCDS
CDS-auto429635auto429635Theobroma cacaoCDS
CDS-auto429636auto429636Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t004480.2 ID=Tc09v2_t004480.2|Name=Tc09v2_t004480.2|organism=Theobroma cacao|type=mRNA|length=1572bp
ATGCAGGCTTGTAGCGGAGCTGCAATGATGGGTTCTGTGCAACAACCCAT
GAGGGTCAATAGACCAGCATTTCCTTTAAAAGGGTCTGGTATTAGTGGAT
TTCCGCACCAGATTAAGCTTAACTCAGTGAAACCCTGTAGAGCTCAACTT
GAAGGGAGCTTAGTCACTGGGAGGCCTCCCTCTTCAGTCTCTGTCCCTGT
GCTCGAAAGCAGTTTTGTGGACCATGGCCTCAGCGAAGCTGATCCTGAGG
TTCGTGCAATTATTAGCAAGGAGAAGGAGAGGCAGTTTAAAAGCCTTGAG
CTTATTGCCTCGGAGAACTTTACATCCCGTGCAGTGATGGAGGCAGTTGG
CTCATGTCTCACAAACAAGTATTCTGAAGGACTGCCTGGTAAAAGGTACT
ATGGTGGCAATGAGTACATTGATGAACTTGAAATACTTTGCCAGAAGAGG
GCTGTGGCAGCGTTTCATTTGGATGAAAAGAAATGGGGCGTTAATGTTCA
ACCATTGTCTGGTTCCCCTGCTAATTTTGAGGTTTATACAGCAATTCTTA
ATCCACATGATCGAATAATGGGTCTGGACTTACCTCATGGGGGACATTTG
TCACATGGATTCATGACTCCTAAAAGACGAGTATCTGGCACATCAATCTA
TTTCGAGTCCATGCCTTATAGACTTGATGAATCTACAGGCCTTGTTGATT
ATGTCATGCTTGAGAAGACAGCTACTCTCTTTCGACCAAAACTCATAATT
GCTGGTGCCAGTGCATATCCTCGAGATTTTGACTATCCTCGTATGAGGAA
GATCGCAGATGCTGTTGGTGCATTTCTCATGATGGATATGGCTCATATAA
GTGGACTTGTTGCTGCTTCTGTAGTTGCTGACCCCTTCGAGTATTGTGAT
ATTGTGACAACTACTACACACAAGTCTTTGAGAGGTCCAAGAGGTGGCAT
GATCTTCTTCAAGAAGGATCCTGTTCTTGGAGTTGACTTAGAATCTGCCA
TTAACAATGCTGTTTTTCCTGGTTTGCAGGGTGGTCCTCACAACCACACA
ATTGGTGGACTAGCAGTTTGCTTGAAACATGCACAGTCACAAGAGTTCAA
GGCTTACCAAAACCAGGTAGTGTCTAATTGTAGAGCTCTTGCAAGCCGAT
TGGTTGAACTTGGCTATAAACTGGTTTCTGGTGGCAGTGACAATCACCTT
GTACTTGTGGATCTGAGGCCATTGGGTATTGATGGGGCTCGGGTGGAGAA
AATACTTGACATGGCCTCTATCACCTTGAACAAAAATTCAGTGCCTGGGG
ATAAGAGTGCACTCGTGCCAGGTGGCATCCGCATTGGATCACCTGCTATG
ACCACTAGAGGATTCACAGAAAAGGAATTCACAGCTATTGCTGACTTCAT
CCATGAGGGTGTGCAAATAACTGTTGATGCTAAAGGATTAGTGTCTGGAT
CAAAGCCACAAGAGTTCTTGAAGTTTGTGGTGTCTCCCGATTTTCCTTTG
ACTGATAAGGTGGCAAATCTCCGGAGTAGAGTTGAAGCACTGACAACCCA
GTTTCCCATTCCTGGGGTATGA
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protein sequence of Tc09v2_p004480.2

>Tc09v2_p004480.2 ID=Tc09v2_p004480.2|Name=Tc09v2_p004480.2|organism=Theobroma cacao|type=polypeptide|length=524bp
MQACSGAAMMGSVQQPMRVNRPAFPLKGSGISGFPHQIKLNSVKPCRAQL
EGSLVTGRPPSSVSVPVLESSFVDHGLSEADPEVRAIISKEKERQFKSLE
LIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELEILCQKR
AVAAFHLDEKKWGVNVQPLSGSPANFEVYTAILNPHDRIMGLDLPHGGHL
SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYVMLEKTATLFRPKLII
AGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVADPFEYCD
IVTTTTHKSLRGPRGGMIFFKKDPVLGVDLESAINNAVFPGLQGGPHNHT
IGGLAVCLKHAQSQEFKAYQNQVVSNCRALASRLVELGYKLVSGGSDNHL
VLVDLRPLGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAM
TTRGFTEKEFTAIADFIHEGVQITVDAKGLVSGSKPQEFLKFVVSPDFPL
TDKVANLRSRVEALTTQFPIPGV*
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