Tc09v2_t004150.2

Overview
NameTc09v2_t004150.2
Unique NameTc09v2_t004150.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length441
Properties
Property NameValue
NotePseudo histidine-containing phosphotransfer protein 5
Model evidenceSupporting evidence includes similarity to: 23 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Producthistidine-containing phosphotransfer protein 4, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588002
GenbankXM_018128054.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g004150Tc09v2_g004150Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p004150.2Tc09v2_p004150.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto428774auto428774Theobroma cacaoexon
exon-auto428775auto428775Theobroma cacaoexon
exon-auto428776auto428776Theobroma cacaoexon
exon-auto428777auto428777Theobroma cacaoexon
exon-auto428778auto428778Theobroma cacaoexon
exon-auto428779auto428779Theobroma cacaoexon
exon-auto428780auto428780Theobroma cacaoexon
exon-auto428781auto428781Theobroma cacaoexon
exon-auto428782auto428782Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto428783auto428783Theobroma cacaoCDS
CDS-auto428784auto428784Theobroma cacaoCDS
CDS-auto428785auto428785Theobroma cacaoCDS
CDS-auto428786auto428786Theobroma cacaoCDS
CDS-auto428787auto428787Theobroma cacaoCDS
CDS-auto428788auto428788Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t004150.2 ID=Tc09v2_t004150.2|Name=Tc09v2_t004150.2|organism=Theobroma cacao|type=mRNA|length=441bp
ATGGGCAGGAATCGCTTGCAACACCAAGTTGCCTGCATGAGAAGGTCCCT
ATTTGATCAGGGATTCCTTGACGAGCAATTCATCCAGCTGGAGGAGTTAC
AAGATGATGCCAGCCCTAATTTTGTACAAGAAATTGTTACACTATTTTAC
ACTGATTCAGCAAGATTGATTCAGAACATCGAACAGGCACTGAACAATGG
GCCTATTGACTTTAGTAAACTGGATGATTACATGCATCAATTCAAGGGTA
GCAGCTCCAGCATTGGAGCTAAAAAGGTGACCGATGAATGCAAAGTGTTC
AGAGAATACTGCAGTGCAGAAAATGCTCAAGGATGCATTAGGACTTTTCA
GCAAGTCAAGCAAGAGTATGCAATCTTGAGGAGGAAGCTCGAAGTTTACT
TCCAGATGGTGAGACAGGCTGATGTTGCTCACACACCATGA
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protein sequence of Tc09v2_p004150.2

>Tc09v2_p004150.2 ID=Tc09v2_p004150.2|Name=Tc09v2_p004150.2|organism=Theobroma cacao|type=polypeptide|length=147bp
MGRNRLQHQVACMRRSLFDQGFLDEQFIQLEELQDDASPNFVQEIVTLFY
TDSARLIQNIEQALNNGPIDFSKLDDYMHQFKGSSSSIGAKKVTDECKVF
REYCSAENAQGCIRTFQQVKQEYAILRRKLEVYFQMVRQADVAHTP*
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