Tc09v2_t004140.3

Overview
NameTc09v2_t004140.3
Unique NameTc09v2_t004140.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1254
Properties
Property NameValue
NoteTryptophan--tRNA ligase, chloroplastic/mitochondrial
Model evidenceSupporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
Producttryptophan--tRNA ligase, chloroplastic/mitochondrial, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588001
GenbankXM_018128052.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g004140Tc09v2_g004140Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p004140.3Tc09v2_p004140.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto428724auto428724Theobroma cacaoexon
exon-auto428725auto428725Theobroma cacaoexon
exon-auto428726auto428726Theobroma cacaoexon
exon-auto428727auto428727Theobroma cacaoexon
exon-auto428728auto428728Theobroma cacaoexon
exon-auto428729auto428729Theobroma cacaoexon
exon-auto428730auto428730Theobroma cacaoexon
exon-auto428731auto428731Theobroma cacaoexon
exon-auto428732auto428732Theobroma cacaoexon
exon-auto428733auto428733Theobroma cacaoexon
exon-auto428734auto428734Theobroma cacaoexon
exon-auto428735auto428735Theobroma cacaoexon
exon-auto428736auto428736Theobroma cacaoexon
exon-auto428737auto428737Theobroma cacaoexon
exon-auto428738auto428738Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto428739auto428739Theobroma cacaoCDS
CDS-auto428740auto428740Theobroma cacaoCDS
CDS-auto428741auto428741Theobroma cacaoCDS
CDS-auto428742auto428742Theobroma cacaoCDS
CDS-auto428743auto428743Theobroma cacaoCDS
CDS-auto428744auto428744Theobroma cacaoCDS
CDS-auto428745auto428745Theobroma cacaoCDS
CDS-auto428746auto428746Theobroma cacaoCDS
CDS-auto428747auto428747Theobroma cacaoCDS
CDS-auto428748auto428748Theobroma cacaoCDS
CDS-auto428749auto428749Theobroma cacaoCDS
CDS-auto428750auto428750Theobroma cacaoCDS
CDS-auto428751auto428751Theobroma cacaoCDS
CDS-auto428752auto428752Theobroma cacaoCDS
CDS-auto428753auto428753Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t004140.3 ID=Tc09v2_t004140.3|Name=Tc09v2_t004140.3|organism=Theobroma cacao|type=mRNA|length=1254bp
ATGGGGCGCGCAGTTCTCTCTCAATTTCTCATGCTTTCCAATTCCGCTCC
TCGCCTCTCATCTTCACTCAGGTCCTGTGGCGGACTTCGAAGTAAATACT
TGAAAAGACCTGGATTAGTCCGTCATAATCGTGCTATAAATGGTGACAAT
GGCGCTGGTTTCCGTTGCTGCTGCAGTGTCTCGCTTTCGCAGCCGGCCAC
TCCGGAGACTTCTTCGAGCTCGGTCAAGCAGAGAATTGTGTCGGGAGTCC
AGCCAACAGGAGCTATCCACCTTGGGAATTATCTTGGTGCCATAAAGAAT
TGGATTGCCCTTCAGAACTCGTATGACACTCTCTTTTTCATTGTGGACCT
CCATGCGATTACATTACCATATGATACACGACAATTATCTAAGGCAACAA
GGAATACAGCAGCTATTTATTTGGCATGTGGTGTAGACACCTCAAAGGCT
TCTGTTTTTGTGCAGTCACATGTCCGTGCCCATGTAGAATTGATGTGGCT
ACTGAGTTCTGCCACACCAATTGGTTGGCTAAACAGAATGATTCAGTTTA
AAGAGAAATCTCGCAAGGCGGGAGATGAAAATGTTGGGGTTGCTCTATTG
ACCTATCCTGTTCTGATGGCTTCTGATATTCTTTTGTATCAGTCTGACTT
TGTCCCAGTTGGTGAAGATCAGAAGCAGCATTTGGAGTTGTCACGTGAGT
TGGCTGAGCGTGTTAACTATTTATATGGAGGAAGGAAGTGGAAAAAGCTG
GGAGGGCGTGGTGGTGCTATTTTTAAGGTTCCTGAGCCCCTAATACCACC
AGCTGGAGCACGAGTTATGTCCCTCAGTGATGGTCTTTCAAAGATGTCCA
AGTCTGCACCTTCTGATCAGTCTCGAATCAATCTTCTTGACCCTAAAGAT
GTGATAGCAAACAAGATAAAGCGTTGCAAGACTGACTCTTTCCCAGGCCT
GGAATTTGACAACCCTGAACGTCCTGAGTGCAACAATCTTCTTTCAATGT
ATCAGATAATTTCAAGCAAGACGAAAGAGGAAGTTGCACAAGAATGCCAA
GATATGAACTGGGGCTCATTTAAAACCCTCCTTACAGATGCATTGGTTGA
TCATCTGCATCCTATCCAGGTTCGGTATGAGGACATTATTTCTGATCCAG
CGTATTTGGATGGAGTCTTGGCAGAAGGGGCTGAGAAAGCTGCAGCTATA
GCTGATGCTACTCTCAATAATGTCTACCAGGCAATGGGATTCTTGTGTAG
ATGA
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protein sequence of Tc09v2_p004140.3

>Tc09v2_p004140.3 ID=Tc09v2_p004140.3|Name=Tc09v2_p004140.3|organism=Theobroma cacao|type=polypeptide|length=418bp
MGRAVLSQFLMLSNSAPRLSSSLRSCGGLRSKYLKRPGLVRHNRAINGDN
GAGFRCCCSVSLSQPATPETSSSSVKQRIVSGVQPTGAIHLGNYLGAIKN
WIALQNSYDTLFFIVDLHAITLPYDTRQLSKATRNTAAIYLACGVDTSKA
SVFVQSHVRAHVELMWLLSSATPIGWLNRMIQFKEKSRKAGDENVGVALL
TYPVLMASDILLYQSDFVPVGEDQKQHLELSRELAERVNYLYGGRKWKKL
GGRGGAIFKVPEPLIPPAGARVMSLSDGLSKMSKSAPSDQSRINLLDPKD
VIANKIKRCKTDSFPGLEFDNPERPECNNLLSMYQIISSKTKEEVAQECQ
DMNWGSFKTLLTDALVDHLHPIQVRYEDIISDPAYLDGVLAEGAEKAAAI
ADATLNNVYQAMGFLCR*
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