Tc09v2_t003850.1

Overview
NameTc09v2_t003850.1
Unique NameTc09v2_t003850.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length723
Properties
Property NameValue
NoteExosome complex exonuclease RRP46 homolog
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productexosome complex exonuclease RRP46 homolog
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587970
GenbankXM_018126568.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g003850Tc09v2_g003850Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p003850.1Tc09v2_p003850.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto428078auto428078Theobroma cacaoexon
exon-auto428079auto428079Theobroma cacaoexon
exon-auto428080auto428080Theobroma cacaoexon
exon-auto428081auto428081Theobroma cacaoexon
exon-auto428082auto428082Theobroma cacaoexon
exon-auto428083auto428083Theobroma cacaoexon
exon-auto428084auto428084Theobroma cacaoexon
exon-auto428085auto428085Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto428086auto428086Theobroma cacaoCDS
CDS-auto428087auto428087Theobroma cacaoCDS
CDS-auto428088auto428088Theobroma cacaoCDS
CDS-auto428089auto428089Theobroma cacaoCDS
CDS-auto428090auto428090Theobroma cacaoCDS
CDS-auto428091auto428091Theobroma cacaoCDS
CDS-auto428092auto428092Theobroma cacaoCDS
CDS-auto428093auto428093Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t003850.1 ID=Tc09v2_t003850.1|Name=Tc09v2_t003850.1|organism=Theobroma cacao|type=mRNA|length=723bp
ATGGAGGTGGATAGGGAAGACGGACGCACGCAGAACCAGTTGAGACCTCT
CGCCTGTTCTCGAAACGTTCTCCATCGTGCTCATGGCTCCGCCAGTTGGT
ATCAAGGAGACACGAAAGTACTTGCTGCTGTTTACGGGCCTAAAGCTGGA
GCAAGAAAGAATGAGAACCCTGAGAAAGCTTGCATTGAAGTTATTTGGAA
GCCTAAAACAGGACAGACTGGAAAACTGGAAAAGGAATATGAGATGATAT
TGAAGAGAACTCTGCAGAGCATTTGTATTTTGACTGTTAACCCAAATACT
ACAACATCGATTATAATTCAGGTTGTCAATGATGATGGTGCTCTTCTCCC
ATGTGCCATAAATGCGGCATGTGTGGCCCTTGTAGATGCAGGAATTCCTA
TGAAGCATCTTGCTGTTGCAATATGTTGTTGTGTGGCCAAGAGTGGATAT
GTTATATTGGATCCCACCAAGCTAGAAGAGCAGAAAATGAAGTCATTTGC
ATATTTAGTTTTCCCAAACTCAGTCCATTCAGTGCTTCCTGAAGGAAGTG
TGCAAGGTGAACCTATGGAACATGGAATTGTTACATCTGTCACCCATGGT
ATAATGTCAGTGGATGATTACTTTTACTGCCTAGAACGAGGGCGTGCTGC
TAGTGCCAAGTTGTCCGATTTTCTCAGGAGGAGCTTGCAACAGCACCCAA
CTGATTCATCTAAAGCTGGGTGA
back to top

protein sequence of Tc09v2_p003850.1

>Tc09v2_p003850.1 ID=Tc09v2_p003850.1|Name=Tc09v2_p003850.1|organism=Theobroma cacao|type=polypeptide|length=241bp
MEVDREDGRTQNQLRPLACSRNVLHRAHGSASWYQGDTKVLAAVYGPKAG
ARKNENPEKACIEVIWKPKTGQTGKLEKEYEMILKRTLQSICILTVNPNT
TTSIIIQVVNDDGALLPCAINAACVALVDAGIPMKHLAVAICCCVAKSGY
VILDPTKLEEQKMKSFAYLVFPNSVHSVLPEGSVQGEPMEHGIVTSVTHG
IMSVDDYFYCLERGRAASAKLSDFLRRSLQQHPTDSSKAG*
back to top